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Magnesium in PDB 1lh0: Crystal Structure of Salmonella Typhimurium Omp Synthase in Complex with Mgprpp and Orotate

Enzymatic activity of Crystal Structure of Salmonella Typhimurium Omp Synthase in Complex with Mgprpp and Orotate

All present enzymatic activity of Crystal Structure of Salmonella Typhimurium Omp Synthase in Complex with Mgprpp and Orotate:
2.4.2.10;

Protein crystallography data

The structure of Crystal Structure of Salmonella Typhimurium Omp Synthase in Complex with Mgprpp and Orotate, PDB code: 1lh0 was solved by A.A.Fedorov, K.Panneerselvam, W.Shi, C.Grubmeyer, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 105.570, 154.230, 52.600, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Salmonella Typhimurium Omp Synthase in Complex with Mgprpp and Orotate (pdb code 1lh0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Salmonella Typhimurium Omp Synthase in Complex with Mgprpp and Orotate, PDB code: 1lh0:

Magnesium binding site 1 out of 1 in 1lh0

Go back to Magnesium Binding Sites List in 1lh0
Magnesium binding site 1 out of 1 in the Crystal Structure of Salmonella Typhimurium Omp Synthase in Complex with Mgprpp and Orotate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Salmonella Typhimurium Omp Synthase in Complex with Mgprpp and Orotate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg5003

b:27.1
occ:1.00
 O B:HOH3026 2.3 24.8 1.0
O3B B:PRP5002 2.4 28.7 1.0
O1 B:PRP5002 2.5 28.8 1.0
O B:HOH3053 2.5 24.0 1.0
O2 B:PRP5002 2.5 24.9 1.0
O3 B:PRP5002 2.6 28.5 1.0
C2 B:PRP5002 3.3 27.6 1.0
PA B:PRP5002 3.4 24.1 1.0
C1 B:PRP5002 3.5 27.8 1.0
O3A B:PRP5002 3.5 30.5 1.0
O1A B:PRP5002 3.5 28.6 1.0
PB B:PRP5002 3.5 27.1 1.0
C3 B:PRP5002 3.5 28.8 1.0
O B:ALA2071 3.9 20.7 1.0
OD2 B:ASP2124 4.0 25.6 1.0
N B:TYR2072 4.3 16.4 1.0
OD1 B:ASP2124 4.3 24.1 1.0
CB B:LYS2073 4.3 20.1 1.0
O4 B:PRP5002 4.3 31.4 1.0
C B:ALA2071 4.4 21.6 1.0
O2B B:PRP5002 4.4 27.2 1.0
CG B:LYS2073 4.4 17.0 1.0
C4 B:PRP5002 4.4 30.1 1.0
N B:LYS2073 4.5 19.1 1.0
O A:HOH3001 4.5 22.3 1.0
O1B B:PRP5002 4.6 26.2 1.0
CG B:ASP2124 4.6 24.2 1.0
OD1 B:ASP2125 4.7 25.0 1.0
O B:PRO2070 4.7 20.6 1.0
O2A B:PRP5002 4.7 27.3 1.0
CB B:ALA2132 4.9 18.1 1.0
OD2 B:ASP2125 5.0 23.9 1.0
CA B:LYS2073 5.0 17.8 1.0

Reference:

C.Grubmeyer, M.R.Hansen, A.A.Fedorov, S.C.Almo. Structure of Salmonella Typhimurium Omp Synthase in A Complete Substrate Complex. Biochemistry V. 51 4397 2012.
ISSN: ISSN 0006-2960
PubMed: 22531064
DOI: 10.1021/BI300083P
Page generated: Sun Aug 10 00:41:50 2025

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