Magnesium in PDB 1lvk: X-Ray Crystal Structure of the Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound to Dictyostelium Discoideum Myosin Motor Domain

The structure of X-Ray Crystal Structure of the Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound to Dictyostelium Discoideum Myosin Motor Domain, PDB code: 1lvk was solved by C.B.Bauer, P.A.Kuhlman, C.R.Bagshaw, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	103.900, 179.900, 53.900, 90.00, 90.00, 90.00
R / Rfree (%)	20 / n/a

The structure of X-Ray Crystal Structure of the Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound to Dictyostelium Discoideum Myosin Motor Domain also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the X-Ray Crystal Structure of the Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound to Dictyostelium Discoideum Myosin Motor Domain (pdb code 1lvk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Crystal Structure of the Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound to Dictyostelium Discoideum Myosin Motor Domain, PDB code: 1lvk:

Magnesium binding site 1 out of 1 in the X-Ray Crystal Structure of the Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound to Dictyostelium Discoideum Myosin Motor Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of the Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound to Dictyostelium Discoideum Myosin Motor Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg998 b:16.9 occ:1.00 F3 A:BEF1000 2.0 14.5 1.0 O2B A:MNT999 2.0 15.3 1.0 OG A:SER237 2.0 16.5 1.0 O A:HOH996 2.0 16.3 1.0 OG1 A:THR186 2.0 27.3 1.0 O A:HOH997 2.2 16.9 1.0 CB A:SER237 3.1 16.9 1.0 CB A:THR186 3.2 16.0 1.0 BE A:BEF1000 3.2 13.3 1.0 PB A:MNT999 3.3 14.6 1.0 O3B A:MNT999 3.5 17.0 1.0 N A:SER237 3.8 19.1 1.0 N A:THR186 4.0 10.7 1.0 F1 A:BEF1000 4.0 17.9 1.0 CA A:SER237 4.0 14.2 1.0 O2A A:MNT999 4.1 13.1 1.0 CA A:THR186 4.1 12.7 1.0 OD2 A:ASP454 4.2 25.4 1.0 CG2 A:THR186 4.2 12.9 1.0 O3A A:MNT999 4.3 16.0 1.0 OD1 A:ASP454 4.3 20.7 1.0 F2 A:BEF1000 4.3 19.5 1.0 O1B A:MNT999 4.3 13.4 1.0 PA A:MNT999 4.6 16.9 1.0 CG A:ASP454 4.7 31.4 1.0 O1A A:MNT999 4.8 14.9 1.0 O A:ASN235 4.8 20.9 1.0 ND2 A:ASN233 4.8 17.1 1.0 C A:SER236 4.9 12.8 1.0 CB A:LYS185 4.9 15.3 1.0 CE A:LYS185 4.9 18.2 1.0

C.B.Bauer, P.A.Kuhlman, C.R.Bagshaw, I.Rayment. X-Ray Crystal Structure and Solution Fluorescence Characterization of Mg.2'(3')-O-(N-Methylanthraniloyl) Nucleotides Bound to the Dictyostelium Discoideum Myosin Motor Domain. J.Mol.Biol. V. 274 394 1997.
ISSN: ISSN 0022-2836
PubMed: 9405148
DOI: 10.1006/JMBI.1997.1325