Magnesium in PDB 1m3u: Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Enzymatic activity of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
All present enzymatic activity of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate:
2.1.2.11;
Protein crystallography data
The structure of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate, PDB code: 1m3u
was solved by
F.Von Delft,
T.Inoue,
S.A.Saldanha,
H.H.Ottenhof,
V.Dhanaraj,
M.Witty,
C.Abell,
A.G.Smith,
T.L.Blundell,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
100.00 /
1.80
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
86.074,
157.170,
100.181,
90.00,
97.44,
90.00
|
R / Rfree (%)
|
15.2 /
19.3
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
(pdb code 1m3u). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 10 binding sites of Magnesium where determined in the
Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate, PDB code: 1m3u:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 10 in 1m3u
Go back to
Magnesium Binding Sites List in 1m3u
Magnesium binding site 1 out
of 10 in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg266
b:40.6
occ:1.00
|
O3
|
A:KPL265
|
2.2
|
31.5
|
1.0
|
OD2
|
A:ASP84
|
2.3
|
30.3
|
1.0
|
O2
|
A:KPL265
|
2.4
|
42.8
|
1.0
|
O
|
A:HOH267
|
2.5
|
31.7
|
1.0
|
OD1
|
A:ASP45
|
2.5
|
24.0
|
1.0
|
O
|
A:HOH268
|
2.5
|
36.9
|
1.0
|
C5
|
A:KPL265
|
3.0
|
40.1
|
1.0
|
C6
|
A:KPL265
|
3.0
|
38.1
|
1.0
|
CG
|
A:ASP84
|
3.3
|
27.5
|
1.0
|
NZ
|
A:LYS112
|
3.4
|
24.0
|
1.0
|
O
|
A:HOH269
|
3.4
|
35.2
|
1.0
|
CG
|
A:ASP45
|
3.5
|
27.1
|
1.0
|
N
|
A:ASP45
|
3.8
|
23.5
|
1.0
|
OD1
|
A:ASP84
|
3.8
|
25.3
|
1.0
|
O1
|
A:KPL265
|
3.8
|
31.2
|
0.5
|
OD2
|
A:ASP45
|
4.1
|
26.9
|
1.0
|
OE2
|
A:GLU114
|
4.1
|
33.0
|
1.0
|
N
|
A:SER46
|
4.2
|
22.9
|
1.0
|
O4
|
A:KPL265
|
4.2
|
36.3
|
1.0
|
C2
|
A:KPL265
|
4.4
|
38.2
|
0.5
|
CA
|
A:ASP45
|
4.4
|
23.3
|
1.0
|
C2
|
A:KPL265
|
4.4
|
40.9
|
0.5
|
CA
|
A:GLY44
|
4.4
|
24.4
|
1.0
|
CB
|
A:ASP45
|
4.5
|
24.1
|
1.0
|
C
|
A:GLY44
|
4.5
|
23.6
|
1.0
|
CB
|
A:ASP84
|
4.6
|
24.3
|
1.0
|
CE
|
A:LYS112
|
4.6
|
26.6
|
1.0
|
CE1
|
A:HIS136
|
4.6
|
26.7
|
1.0
|
C
|
A:ASP45
|
4.6
|
22.1
|
1.0
|
C4
|
A:KPL265
|
4.6
|
36.9
|
0.5
|
C4
|
A:KPL265
|
4.7
|
41.5
|
0.5
|
O
|
A:HOH270
|
4.7
|
34.5
|
1.0
|
ND1
|
A:HIS136
|
4.8
|
25.9
|
1.0
|
C3
|
A:KPL265
|
4.9
|
41.4
|
0.5
|
C3
|
A:KPL265
|
5.0
|
38.2
|
0.5
|
CD2
|
A:LEU42
|
5.0
|
32.1
|
1.0
|
|
Magnesium binding site 2 out
of 10 in 1m3u
Go back to
Magnesium Binding Sites List in 1m3u
Magnesium binding site 2 out
of 10 in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg266
b:37.6
occ:1.00
|
OD2
|
B:ASP84
|
2.2
|
25.6
|
1.0
|
O3
|
B:KPL265
|
2.3
|
32.3
|
1.0
|
O
|
B:HOH267
|
2.4
|
32.6
|
1.0
|
OD1
|
B:ASP45
|
2.4
|
26.4
|
1.0
|
O
|
B:HOH268
|
2.5
|
35.6
|
1.0
|
O2
|
B:KPL265
|
2.6
|
39.7
|
1.0
|
C6
|
B:KPL265
|
3.0
|
36.7
|
1.0
|
C5
|
B:KPL265
|
3.1
|
36.9
|
1.0
|
CG
|
B:ASP84
|
3.3
|
27.4
|
1.0
|
CG
|
B:ASP45
|
3.4
|
27.1
|
1.0
|
NZ
|
B:LYS112
|
3.4
|
22.6
|
1.0
|
O
|
B:HOH269
|
3.5
|
34.0
|
1.0
|
N
|
B:ASP45
|
3.7
|
23.6
|
1.0
|
OD1
|
B:ASP84
|
3.7
|
27.9
|
1.0
|
OD2
|
B:ASP45
|
4.0
|
28.9
|
1.0
|
OE2
|
B:GLU114
|
4.1
|
33.0
|
1.0
|
O1
|
B:KPL265
|
4.2
|
30.7
|
0.5
|
O4
|
B:KPL265
|
4.2
|
35.2
|
1.0
|
N
|
B:SER46
|
4.2
|
21.5
|
1.0
|
CB
|
B:ASP45
|
4.4
|
23.8
|
1.0
|
CA
|
B:ASP45
|
4.4
|
23.1
|
1.0
|
C2
|
B:KPL265
|
4.4
|
36.4
|
0.5
|
CB
|
B:ASP84
|
4.5
|
24.7
|
1.0
|
C2
|
B:KPL265
|
4.5
|
38.3
|
0.5
|
CA
|
B:GLY44
|
4.5
|
25.1
|
1.0
|
C
|
B:GLY44
|
4.6
|
24.5
|
1.0
|
C
|
B:ASP45
|
4.6
|
21.4
|
1.0
|
CE1
|
B:HIS136
|
4.7
|
23.8
|
1.0
|
CE
|
B:LYS112
|
4.7
|
25.9
|
1.0
|
O
|
B:HOH270
|
4.8
|
32.8
|
1.0
|
C4
|
B:KPL265
|
4.8
|
34.5
|
0.5
|
C4
|
B:KPL265
|
4.8
|
38.8
|
0.5
|
ND1
|
B:HIS136
|
4.9
|
24.4
|
1.0
|
C3
|
B:KPL265
|
4.9
|
39.4
|
0.5
|
|
Magnesium binding site 3 out
of 10 in 1m3u
Go back to
Magnesium Binding Sites List in 1m3u
Magnesium binding site 3 out
of 10 in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg266
b:47.7
occ:1.00
|
OD2
|
C:ASP84
|
2.2
|
29.5
|
1.0
|
O3
|
C:KPL265
|
2.2
|
32.0
|
1.0
|
OD1
|
C:ASP45
|
2.4
|
25.5
|
1.0
|
O
|
C:HOH267
|
2.4
|
34.5
|
1.0
|
O
|
C:HOH268
|
2.5
|
35.0
|
1.0
|
O2
|
C:KPL265
|
2.6
|
41.2
|
1.0
|
C6
|
C:KPL265
|
3.0
|
40.3
|
1.0
|
C5
|
C:KPL265
|
3.2
|
41.9
|
1.0
|
CG
|
C:ASP84
|
3.3
|
27.1
|
1.0
|
CG
|
C:ASP45
|
3.4
|
28.5
|
1.0
|
NZ
|
C:LYS112
|
3.5
|
24.4
|
1.0
|
O
|
C:HOH269
|
3.6
|
30.4
|
1.0
|
N
|
C:ASP45
|
3.7
|
24.1
|
1.0
|
OD1
|
C:ASP84
|
3.8
|
28.1
|
1.0
|
O1
|
C:KPL265
|
3.8
|
37.8
|
0.5
|
OD2
|
C:ASP45
|
4.0
|
29.1
|
1.0
|
OE2
|
C:GLU114
|
4.0
|
32.4
|
1.0
|
N
|
C:SER46
|
4.1
|
22.9
|
1.0
|
O4
|
C:KPL265
|
4.2
|
38.6
|
1.0
|
CA
|
C:ASP45
|
4.3
|
24.9
|
1.0
|
CB
|
C:ASP45
|
4.3
|
24.8
|
1.0
|
CA
|
C:GLY44
|
4.4
|
24.0
|
1.0
|
C
|
C:GLY44
|
4.4
|
24.1
|
1.0
|
CB
|
C:ASP84
|
4.4
|
24.8
|
1.0
|
C
|
C:ASP45
|
4.5
|
23.5
|
1.0
|
C2
|
C:KPL265
|
4.5
|
41.7
|
0.5
|
C2
|
C:KPL265
|
4.5
|
41.8
|
0.5
|
C4
|
C:KPL265
|
4.7
|
40.6
|
0.5
|
CE
|
C:LYS112
|
4.7
|
25.8
|
1.0
|
CE1
|
C:HIS136
|
4.7
|
24.1
|
1.0
|
O
|
C:HOH270
|
4.8
|
32.6
|
1.0
|
C4
|
C:KPL265
|
4.9
|
42.0
|
0.5
|
ND1
|
C:HIS136
|
4.9
|
25.0
|
1.0
|
|
Magnesium binding site 4 out
of 10 in 1m3u
Go back to
Magnesium Binding Sites List in 1m3u
Magnesium binding site 4 out
of 10 in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg266
b:46.7
occ:1.00
|
OD2
|
D:ASP84
|
2.1
|
28.9
|
1.0
|
O3
|
D:KPL265
|
2.2
|
29.3
|
1.0
|
O
|
D:HOH267
|
2.5
|
35.1
|
1.0
|
O
|
D:HOH268
|
2.5
|
40.0
|
1.0
|
OD1
|
D:ASP45
|
2.6
|
24.6
|
1.0
|
O2
|
D:KPL265
|
2.6
|
44.9
|
1.0
|
C6
|
D:KPL265
|
3.0
|
40.3
|
1.0
|
C5
|
D:KPL265
|
3.1
|
40.6
|
1.0
|
CG
|
D:ASP84
|
3.2
|
26.9
|
1.0
|
NZ
|
D:LYS112
|
3.4
|
22.5
|
1.0
|
CG
|
D:ASP45
|
3.5
|
25.7
|
1.0
|
O
|
D:HOH269
|
3.6
|
30.3
|
1.0
|
OD1
|
D:ASP84
|
3.6
|
27.4
|
1.0
|
N
|
D:ASP45
|
3.6
|
25.0
|
1.0
|
O1
|
D:KPL265
|
4.0
|
36.2
|
0.5
|
OE2
|
D:GLU114
|
4.1
|
30.6
|
1.0
|
OD2
|
D:ASP45
|
4.1
|
27.3
|
1.0
|
N
|
D:SER46
|
4.2
|
22.7
|
1.0
|
O4
|
D:KPL265
|
4.2
|
38.3
|
1.0
|
CA
|
D:GLY44
|
4.3
|
26.0
|
1.0
|
CA
|
D:ASP45
|
4.4
|
24.6
|
1.0
|
CB
|
D:ASP84
|
4.4
|
24.4
|
1.0
|
C
|
D:GLY44
|
4.4
|
25.3
|
1.0
|
CB
|
D:ASP45
|
4.5
|
25.0
|
1.0
|
C2
|
D:KPL265
|
4.5
|
40.2
|
0.5
|
C2
|
D:KPL265
|
4.5
|
40.4
|
0.5
|
C
|
D:ASP45
|
4.6
|
23.7
|
1.0
|
CE
|
D:LYS112
|
4.6
|
24.1
|
1.0
|
CE1
|
D:HIS136
|
4.7
|
25.3
|
1.0
|
O
|
D:HOH270
|
4.8
|
33.0
|
1.0
|
C4
|
D:KPL265
|
4.8
|
39.3
|
0.5
|
ND1
|
D:HIS136
|
4.9
|
24.4
|
1.0
|
CD2
|
D:LEU42
|
4.9
|
32.7
|
1.0
|
C4
|
D:KPL265
|
5.0
|
39.4
|
0.5
|
|
Magnesium binding site 5 out
of 10 in 1m3u
Go back to
Magnesium Binding Sites List in 1m3u
Magnesium binding site 5 out
of 10 in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg266
b:36.9
occ:1.00
|
O3
|
E:KPL265
|
2.2
|
26.2
|
1.0
|
OD2
|
E:ASP84
|
2.4
|
21.2
|
1.0
|
OD1
|
E:ASP45
|
2.4
|
20.9
|
1.0
|
O2
|
E:KPL265
|
2.5
|
37.8
|
1.0
|
O
|
E:HOH268
|
2.6
|
29.6
|
1.0
|
O
|
E:HOH267
|
2.8
|
29.3
|
1.0
|
C6
|
E:KPL265
|
3.0
|
35.5
|
1.0
|
C5
|
E:KPL265
|
3.1
|
37.4
|
1.0
|
CG
|
E:ASP45
|
3.4
|
22.7
|
1.0
|
CG
|
E:ASP84
|
3.5
|
23.9
|
1.0
|
O
|
E:HOH269
|
3.6
|
24.3
|
1.0
|
NZ
|
E:LYS112
|
3.6
|
18.1
|
1.0
|
N
|
E:ASP45
|
3.7
|
21.9
|
1.0
|
OD1
|
E:ASP84
|
3.9
|
27.2
|
1.0
|
N
|
E:SER46
|
4.0
|
20.9
|
1.0
|
O1
|
E:KPL265
|
4.0
|
35.1
|
0.5
|
OD2
|
E:ASP45
|
4.1
|
26.6
|
1.0
|
O4
|
E:KPL265
|
4.2
|
38.3
|
1.0
|
CA
|
E:ASP45
|
4.3
|
21.3
|
1.0
|
CA
|
E:GLY44
|
4.3
|
21.5
|
1.0
|
C2
|
E:KPL265
|
4.4
|
37.6
|
0.5
|
OE2
|
E:GLU114
|
4.4
|
25.1
|
1.0
|
CB
|
E:ASP45
|
4.4
|
22.3
|
1.0
|
C2
|
E:KPL265
|
4.4
|
38.8
|
0.5
|
C
|
E:GLY44
|
4.4
|
22.0
|
1.0
|
C
|
E:ASP45
|
4.5
|
20.6
|
1.0
|
C4
|
E:KPL265
|
4.5
|
37.5
|
0.5
|
CB
|
E:ASP84
|
4.6
|
20.8
|
1.0
|
CE
|
E:LYS112
|
4.7
|
19.8
|
1.0
|
C4
|
E:KPL265
|
4.7
|
39.5
|
0.5
|
CE1
|
E:HIS136
|
4.8
|
19.2
|
1.0
|
CD2
|
E:LEU42
|
4.9
|
22.4
|
1.0
|
C3
|
E:KPL265
|
4.9
|
39.1
|
0.5
|
ND1
|
E:HIS136
|
5.0
|
19.0
|
1.0
|
CA
|
E:SER46
|
5.0
|
20.3
|
1.0
|
|
Magnesium binding site 6 out
of 10 in 1m3u
Go back to
Magnesium Binding Sites List in 1m3u
Magnesium binding site 6 out
of 10 in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg266
b:39.3
occ:1.00
|
O3
|
F:KPL265
|
2.3
|
34.8
|
1.0
|
OD2
|
F:ASP84
|
2.3
|
23.7
|
1.0
|
O2
|
F:KPL265
|
2.4
|
38.3
|
1.0
|
O
|
F:HOH267
|
2.5
|
35.1
|
1.0
|
OD1
|
F:ASP45
|
2.6
|
25.9
|
1.0
|
O
|
F:HOH268
|
2.7
|
33.0
|
1.0
|
C6
|
F:KPL265
|
3.0
|
38.8
|
1.0
|
C5
|
F:KPL265
|
3.0
|
37.9
|
1.0
|
CG
|
F:ASP84
|
3.3
|
25.2
|
1.0
|
NZ
|
F:LYS112
|
3.3
|
23.2
|
1.0
|
O
|
F:HOH269
|
3.6
|
28.7
|
1.0
|
CG
|
F:ASP45
|
3.6
|
24.8
|
1.0
|
N
|
F:ASP45
|
3.7
|
24.6
|
1.0
|
OD1
|
F:ASP84
|
3.7
|
30.4
|
1.0
|
O1
|
F:KPL265
|
4.1
|
30.1
|
0.5
|
OE2
|
F:GLU114
|
4.1
|
32.6
|
1.0
|
N
|
F:SER46
|
4.2
|
21.7
|
1.0
|
O4
|
F:KPL265
|
4.2
|
40.3
|
1.0
|
OD2
|
F:ASP45
|
4.3
|
28.2
|
1.0
|
CA
|
F:GLY44
|
4.3
|
24.1
|
1.0
|
C2
|
F:KPL265
|
4.4
|
36.5
|
0.5
|
C2
|
F:KPL265
|
4.4
|
38.3
|
0.5
|
CA
|
F:ASP45
|
4.4
|
23.5
|
1.0
|
CE
|
F:LYS112
|
4.4
|
25.4
|
1.0
|
C
|
F:GLY44
|
4.5
|
24.7
|
1.0
|
CB
|
F:ASP84
|
4.5
|
24.1
|
1.0
|
CB
|
F:ASP45
|
4.5
|
24.4
|
1.0
|
C4
|
F:KPL265
|
4.6
|
35.8
|
0.5
|
C
|
F:ASP45
|
4.6
|
22.5
|
1.0
|
CE1
|
F:HIS136
|
4.7
|
24.7
|
1.0
|
C4
|
F:KPL265
|
4.8
|
39.2
|
0.5
|
CD2
|
F:LEU42
|
4.8
|
27.1
|
1.0
|
O
|
F:HOH270
|
4.8
|
30.8
|
1.0
|
ND1
|
F:HIS136
|
4.8
|
23.8
|
1.0
|
C3
|
F:KPL265
|
4.9
|
38.2
|
0.5
|
C3
|
F:KPL265
|
5.0
|
37.8
|
0.5
|
|
Magnesium binding site 7 out
of 10 in 1m3u
Go back to
Magnesium Binding Sites List in 1m3u
Magnesium binding site 7 out
of 10 in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg266
b:43.5
occ:1.00
|
OD2
|
G:ASP84
|
2.2
|
27.0
|
1.0
|
O3
|
G:KPL265
|
2.3
|
30.2
|
1.0
|
O2
|
G:KPL265
|
2.4
|
41.2
|
1.0
|
O
|
G:HOH267
|
2.4
|
36.4
|
1.0
|
O
|
G:HOH268
|
2.5
|
47.5
|
1.0
|
OD1
|
G:ASP45
|
2.7
|
28.2
|
1.0
|
C6
|
G:KPL265
|
3.1
|
43.5
|
1.0
|
C5
|
G:KPL265
|
3.1
|
41.6
|
1.0
|
NZ
|
G:LYS112
|
3.3
|
22.8
|
1.0
|
CG
|
G:ASP84
|
3.3
|
26.6
|
1.0
|
O
|
G:HOH269
|
3.6
|
40.7
|
1.0
|
OD1
|
G:ASP84
|
3.7
|
29.0
|
1.0
|
CG
|
G:ASP45
|
3.7
|
29.4
|
1.0
|
N
|
G:ASP45
|
3.8
|
24.6
|
1.0
|
O1
|
G:KPL265
|
4.0
|
41.5
|
0.5
|
OE2
|
G:GLU114
|
4.0
|
36.5
|
1.0
|
O4
|
G:KPL265
|
4.3
|
42.0
|
1.0
|
N
|
G:SER46
|
4.3
|
25.1
|
1.0
|
OD2
|
G:ASP45
|
4.3
|
30.5
|
1.0
|
CA
|
G:GLY44
|
4.4
|
25.6
|
1.0
|
C2
|
G:KPL265
|
4.5
|
40.7
|
0.5
|
C2
|
G:KPL265
|
4.5
|
41.7
|
0.5
|
C
|
G:GLY44
|
4.5
|
25.6
|
1.0
|
CA
|
G:ASP45
|
4.5
|
24.9
|
1.0
|
CE
|
G:LYS112
|
4.5
|
25.7
|
1.0
|
CB
|
G:ASP84
|
4.6
|
23.9
|
1.0
|
O
|
G:HOH270
|
4.6
|
38.7
|
1.0
|
CB
|
G:ASP45
|
4.6
|
25.6
|
1.0
|
CE1
|
G:HIS136
|
4.6
|
28.4
|
1.0
|
C
|
G:ASP45
|
4.8
|
23.5
|
1.0
|
ND1
|
G:HIS136
|
4.8
|
27.3
|
1.0
|
C4
|
G:KPL265
|
4.9
|
41.6
|
0.5
|
C3
|
G:KPL265
|
4.9
|
39.7
|
0.5
|
C3
|
G:KPL265
|
4.9
|
42.0
|
0.5
|
|
Magnesium binding site 8 out
of 10 in 1m3u
Go back to
Magnesium Binding Sites List in 1m3u
Magnesium binding site 8 out
of 10 in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg266
b:36.9
occ:1.00
|
OD2
|
H:ASP84
|
2.1
|
26.4
|
1.0
|
O3
|
H:KPL265
|
2.1
|
30.2
|
1.0
|
O2
|
H:KPL265
|
2.4
|
41.6
|
1.0
|
OD1
|
H:ASP45
|
2.5
|
25.5
|
1.0
|
O
|
H:HOH268
|
2.6
|
38.8
|
1.0
|
O
|
H:HOH267
|
2.7
|
41.5
|
1.0
|
C6
|
H:KPL265
|
2.9
|
38.3
|
1.0
|
C5
|
H:KPL265
|
3.0
|
39.6
|
1.0
|
CG
|
H:ASP84
|
3.2
|
27.1
|
1.0
|
NZ
|
H:LYS112
|
3.4
|
21.2
|
1.0
|
O
|
H:HOH269
|
3.5
|
35.3
|
1.0
|
CG
|
H:ASP45
|
3.5
|
24.5
|
1.0
|
OD1
|
H:ASP84
|
3.6
|
28.1
|
1.0
|
N
|
H:ASP45
|
3.7
|
24.5
|
1.0
|
O1
|
H:KPL265
|
4.0
|
36.6
|
0.5
|
O4
|
H:KPL265
|
4.1
|
38.1
|
1.0
|
N
|
H:SER46
|
4.1
|
23.0
|
1.0
|
OD2
|
H:ASP45
|
4.2
|
26.8
|
1.0
|
CA
|
H:GLY44
|
4.3
|
24.7
|
1.0
|
OE2
|
H:GLU114
|
4.3
|
27.0
|
1.0
|
C2
|
H:KPL265
|
4.3
|
39.0
|
0.5
|
CA
|
H:ASP45
|
4.3
|
23.7
|
1.0
|
CB
|
H:ASP84
|
4.4
|
23.9
|
1.0
|
C
|
H:GLY44
|
4.4
|
24.6
|
1.0
|
C2
|
H:KPL265
|
4.4
|
40.2
|
0.5
|
CB
|
H:ASP45
|
4.5
|
24.3
|
1.0
|
C4
|
H:KPL265
|
4.6
|
39.1
|
0.5
|
C
|
H:ASP45
|
4.6
|
22.2
|
1.0
|
CE
|
H:LYS112
|
4.6
|
23.9
|
1.0
|
CD2
|
H:LEU42
|
4.8
|
33.6
|
1.0
|
CE1
|
H:HIS136
|
4.9
|
23.8
|
1.0
|
O
|
H:HOH270
|
4.9
|
33.8
|
1.0
|
C3
|
H:KPL265
|
4.9
|
39.8
|
0.5
|
C4
|
H:KPL265
|
4.9
|
40.2
|
0.5
|
C3
|
H:KPL265
|
5.0
|
38.1
|
0.5
|
|
Magnesium binding site 9 out
of 10 in 1m3u
Go back to
Magnesium Binding Sites List in 1m3u
Magnesium binding site 9 out
of 10 in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg266
b:50.3
occ:1.00
|
OD2
|
I:ASP84
|
2.2
|
32.1
|
1.0
|
O3
|
I:KPL265
|
2.2
|
35.3
|
1.0
|
O
|
I:HOH267
|
2.3
|
29.1
|
1.0
|
O
|
I:HOH268
|
2.4
|
29.4
|
1.0
|
OD1
|
I:ASP45
|
2.5
|
26.5
|
1.0
|
O2
|
I:KPL265
|
2.5
|
40.7
|
1.0
|
C6
|
I:KPL265
|
3.0
|
39.9
|
1.0
|
C5
|
I:KPL265
|
3.1
|
39.9
|
1.0
|
NZ
|
I:LYS112
|
3.2
|
25.4
|
1.0
|
CG
|
I:ASP84
|
3.3
|
26.2
|
1.0
|
CG
|
I:ASP45
|
3.4
|
23.6
|
1.0
|
O
|
I:HOH269
|
3.5
|
30.6
|
1.0
|
N
|
I:ASP45
|
3.6
|
24.1
|
1.0
|
OD1
|
I:ASP84
|
3.7
|
28.4
|
1.0
|
OE2
|
I:GLU114
|
3.9
|
27.8
|
1.0
|
O1
|
I:KPL265
|
4.0
|
34.5
|
0.5
|
OD2
|
I:ASP45
|
4.0
|
27.6
|
1.0
|
N
|
I:SER46
|
4.2
|
21.6
|
1.0
|
O4
|
I:KPL265
|
4.2
|
38.8
|
1.0
|
CA
|
I:ASP45
|
4.3
|
22.6
|
1.0
|
CB
|
I:ASP45
|
4.4
|
23.7
|
1.0
|
CA
|
I:GLY44
|
4.4
|
23.6
|
1.0
|
CB
|
I:ASP84
|
4.4
|
23.5
|
1.0
|
C
|
I:GLY44
|
4.4
|
24.7
|
1.0
|
C2
|
I:KPL265
|
4.4
|
37.7
|
0.5
|
C2
|
I:KPL265
|
4.4
|
39.0
|
0.5
|
CE
|
I:LYS112
|
4.5
|
29.6
|
1.0
|
C
|
I:ASP45
|
4.6
|
22.6
|
1.0
|
CE1
|
I:HIS136
|
4.6
|
24.9
|
1.0
|
C4
|
I:KPL265
|
4.6
|
35.1
|
0.5
|
O
|
I:HOH270
|
4.7
|
34.4
|
1.0
|
ND1
|
I:HIS136
|
4.8
|
24.3
|
1.0
|
C4
|
I:KPL265
|
4.8
|
39.3
|
0.5
|
O
|
I:HOH528
|
4.8
|
40.1
|
1.0
|
C3
|
I:KPL265
|
4.9
|
39.8
|
0.5
|
|
Magnesium binding site 10 out
of 10 in 1m3u
Go back to
Magnesium Binding Sites List in 1m3u
Magnesium binding site 10 out
of 10 in the Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of Ketopantoate Hydroxymethyltransferase Complexed the Product Ketopantoate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg266
b:37.1
occ:1.00
|
OD2
|
J:ASP84
|
2.1
|
19.6
|
1.0
|
O3
|
J:KPL265
|
2.3
|
29.7
|
1.0
|
O2
|
J:KPL265
|
2.4
|
38.6
|
1.0
|
O
|
J:HOH267
|
2.5
|
41.4
|
1.0
|
O
|
J:HOH268
|
2.7
|
34.9
|
1.0
|
OD1
|
J:ASP45
|
2.8
|
20.3
|
1.0
|
C6
|
J:KPL265
|
3.1
|
37.8
|
1.0
|
C5
|
J:KPL265
|
3.1
|
38.3
|
1.0
|
CG
|
J:ASP84
|
3.3
|
20.4
|
1.0
|
NZ
|
J:LYS112
|
3.3
|
19.8
|
1.0
|
OD1
|
J:ASP84
|
3.7
|
22.6
|
1.0
|
CG
|
J:ASP45
|
3.7
|
22.8
|
1.0
|
N
|
J:ASP45
|
3.8
|
21.8
|
1.0
|
O
|
J:HOH269
|
3.8
|
26.2
|
1.0
|
O1
|
J:KPL265
|
3.9
|
37.7
|
0.5
|
OE2
|
J:GLU114
|
4.2
|
34.1
|
1.0
|
OD2
|
J:ASP45
|
4.3
|
27.4
|
1.0
|
O4
|
J:KPL265
|
4.3
|
38.8
|
1.0
|
CA
|
J:GLY44
|
4.3
|
22.4
|
1.0
|
N
|
J:SER46
|
4.3
|
20.9
|
1.0
|
C2
|
J:KPL265
|
4.5
|
39.0
|
0.5
|
C
|
J:GLY44
|
4.5
|
22.0
|
1.0
|
CB
|
J:ASP84
|
4.5
|
20.1
|
1.0
|
C2
|
J:KPL265
|
4.5
|
39.7
|
0.5
|
CE
|
J:LYS112
|
4.5
|
20.9
|
1.0
|
CA
|
J:ASP45
|
4.6
|
21.1
|
1.0
|
CE1
|
J:HIS136
|
4.6
|
24.1
|
1.0
|
CB
|
J:ASP45
|
4.6
|
20.3
|
1.0
|
ND1
|
J:HIS136
|
4.8
|
24.3
|
1.0
|
C4
|
J:KPL265
|
4.8
|
38.8
|
0.5
|
C
|
J:ASP45
|
4.8
|
21.1
|
1.0
|
C3
|
J:KPL265
|
4.9
|
39.8
|
0.5
|
O
|
J:HOH270
|
4.9
|
25.9
|
1.0
|
C3
|
J:KPL265
|
5.0
|
38.8
|
0.5
|
|
Reference:
F.Von Delft,
T.Inoue,
S.A.Saldanha,
H.H.Ottenhof,
F.Schmitzberger,
L.M.Birch,
V.Dhanaraj,
M.Witty,
A.G.Smith,
T.L.Blundell,
C.Abell.
Structure of E. Coli Ketopantoate Hydroxymethyl Transferase Complexed with Ketopantoate and Mg(2+), Solved By Locating 160 Selenomethionine Sites. Structure V. 11 985 2003.
ISSN: ISSN 0969-2126
PubMed: 12906829
DOI: 10.1016/S0969-2126(03)00158-8
Page generated: Tue Aug 13 08:37:04 2024
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