Magnesium in PDB 1mfr: Crystal Structure of M Ferritin

The structure of Crystal Structure of M Ferritin, PDB code: 1mfr was solved by Y.Ha, D.Shi, N.M.Allewell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.80
Space group	P 31 2 1 1
Cell size a, b, c (Å), α, β, γ (°)	210.800, 210.800, 328.100, 90.00, 90.00, 120.00
R / Rfree (%)	19 / 19.4

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of M Ferritin (pdb code 1mfr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 48 binding sites of Magnesium where determined in the Crystal Structure of M Ferritin, PDB code: 1mfr:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 48 in the Crystal Structure of M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of M Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg176 b:51.0 occ:1.00 OE1 A:GLU58 2.0 36.9 1.0 OE1 A:GLU23 2.4 34.3 1.0 OE2 A:GLU23 2.5 36.8 1.0 ND1 A:HIS61 2.7 42.3 1.0 CD A:GLU23 2.8 34.1 1.0 CD A:GLU58 3.2 38.9 1.0 OE1 A:GLN137 3.4 38.5 1.0 CE1 A:HIS61 3.5 42.9 1.0 OE2 A:GLU58 3.7 43.1 1.0 CG A:HIS61 3.7 39.6 1.0 CG1 A:VAL106 3.8 22.1 1.0 MG A:MG177 4.0 51.0 1.0 CB A:HIS61 4.1 34.4 1.0 CG A:GLU23 4.3 29.8 1.0 CG A:GLU58 4.4 35.8 1.0 CD A:GLN137 4.5 33.3 1.0 NE2 A:HIS61 4.6 43.3 1.0 CA A:GLU58 4.7 33.9 1.0 CB A:GLU58 4.8 33.8 1.0 CD2 A:HIS61 4.8 40.8 1.0 CD2 A:TYR133 4.9 24.2 1.0

Magnesium binding site 2 out of 48 in the Crystal Structure of M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of M Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg177 b:51.0 occ:1.00 OD2 A:ASP140 2.5 37.2 1.0 OE2 A:GLU58 2.6 43.1 1.0 OE1 A:GLN137 2.7 38.5 1.0 OE1 A:GLU103 2.9 36.5 1.0 OE2 A:GLU103 3.2 35.1 1.0 CD A:GLU103 3.4 32.4 1.0 CD A:GLU58 3.5 38.9 1.0 CD A:GLN137 3.6 33.3 1.0 CG A:ASP140 3.6 33.3 1.0 OE1 A:GLU58 3.7 36.9 1.0 MG A:MG176 4.0 51.0 1.0 NE2 A:GLN137 4.0 32.6 1.0 CB A:ASP140 4.1 28.6 1.0 CE1 A:HIS61 4.3 42.9 1.0 OD1 A:ASP140 4.7 35.7 1.0 ND1 A:HIS61 4.7 42.3 1.0 CG A:GLN137 4.7 31.0 1.0 O A:GLU136 4.8 29.3 1.0 ND1 A:HIS54 4.8 46.6 1.0 CE1 A:HIS54 4.8 49.3 1.0 CG A:GLU103 4.8 29.1 1.0 CG A:GLU58 4.9 35.8 1.0 CA A:GLN137 4.9 26.8 1.0 OE1 A:GLU57 4.9 75.9 1.0

Magnesium binding site 3 out of 48 in the Crystal Structure of M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of M Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg176 b:51.0 occ:1.00 OE1 B:GLU58 2.0 36.9 1.0 OE1 B:GLU23 2.4 34.3 1.0 OE2 B:GLU23 2.5 36.8 1.0 ND1 B:HIS61 2.7 42.3 1.0 CD B:GLU23 2.8 34.1 1.0 CD B:GLU58 3.2 38.9 1.0 OE1 B:GLN137 3.4 38.5 1.0 CE1 B:HIS61 3.5 42.9 1.0 OE2 B:GLU58 3.7 43.1 1.0 CG B:HIS61 3.7 39.6 1.0 CG1 B:VAL106 3.8 22.1 1.0 MG B:MG177 4.0 51.0 1.0 CB B:HIS61 4.1 34.4 1.0 CG B:GLU23 4.3 29.8 1.0 CG B:GLU58 4.4 35.8 1.0 CD B:GLN137 4.5 33.3 1.0 NE2 B:HIS61 4.6 43.3 1.0 CA B:GLU58 4.7 33.9 1.0 CB B:GLU58 4.8 33.8 1.0 CD2 B:HIS61 4.8 40.8 1.0 CD2 B:TYR133 4.9 24.2 1.0

Magnesium binding site 4 out of 48 in the Crystal Structure of M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of M Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg177 b:51.0 occ:1.00 OD2 B:ASP140 2.5 37.2 1.0 OE2 B:GLU58 2.6 43.1 1.0 OE1 B:GLN137 2.7 38.5 1.0 OE1 B:GLU103 2.9 36.5 1.0 OE2 B:GLU103 3.2 35.1 1.0 CD B:GLU103 3.4 32.4 1.0 CD B:GLU58 3.5 38.9 1.0 CD B:GLN137 3.6 33.3 1.0 CG B:ASP140 3.6 33.3 1.0 OE1 B:GLU58 3.7 36.9 1.0 MG B:MG176 4.0 51.0 1.0 NE2 B:GLN137 4.0 32.6 1.0 CB B:ASP140 4.1 28.6 1.0 CE1 B:HIS61 4.3 42.9 1.0 OD1 B:ASP140 4.7 35.7 1.0 ND1 B:HIS61 4.7 42.3 1.0 CG B:GLN137 4.7 31.0 1.0 O B:GLU136 4.8 29.3 1.0 ND1 B:HIS54 4.8 46.6 1.0 CE1 B:HIS54 4.8 49.3 1.0 CG B:GLU103 4.8 29.1 1.0 CG B:GLU58 4.9 35.8 1.0 CA B:GLN137 4.9 26.8 1.0 OE1 B:GLU57 4.9 75.9 1.0

Magnesium binding site 5 out of 48 in the Crystal Structure of M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of M Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg176 b:51.0 occ:1.00 OE1 C:GLU58 2.0 36.9 1.0 OE1 C:GLU23 2.4 34.3 1.0 OE2 C:GLU23 2.5 36.8 1.0 ND1 C:HIS61 2.7 42.3 1.0 CD C:GLU23 2.8 34.1 1.0 CD C:GLU58 3.2 38.9 1.0 OE1 C:GLN137 3.4 38.5 1.0 CE1 C:HIS61 3.5 42.9 1.0 OE2 C:GLU58 3.7 43.1 1.0 CG C:HIS61 3.7 39.6 1.0 CG1 C:VAL106 3.8 22.1 1.0 MG C:MG177 4.0 51.0 1.0 CB C:HIS61 4.1 34.4 1.0 CG C:GLU23 4.3 29.8 1.0 CG C:GLU58 4.4 35.8 1.0 CD C:GLN137 4.5 33.3 1.0 NE2 C:HIS61 4.6 43.3 1.0 CA C:GLU58 4.7 33.9 1.0 CB C:GLU58 4.8 33.8 1.0 CD2 C:HIS61 4.8 40.8 1.0 CD2 C:TYR133 4.9 24.2 1.0 OE1 C:GLU103 5.0 36.5 1.0

Magnesium binding site 6 out of 48 in the Crystal Structure of M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of M Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg177 b:51.0 occ:1.00 OD2 C:ASP140 2.5 37.2 1.0 OE2 C:GLU58 2.6 43.1 1.0 OE1 C:GLN137 2.7 38.5 1.0 OE1 C:GLU103 2.9 36.5 1.0 OE2 C:GLU103 3.2 35.1 1.0 CD C:GLU103 3.4 32.4 1.0 CD C:GLU58 3.5 38.9 1.0 CD C:GLN137 3.6 33.3 1.0 CG C:ASP140 3.6 33.3 1.0 OE1 C:GLU58 3.7 36.9 1.0 MG C:MG176 4.0 51.0 1.0 NE2 C:GLN137 4.0 32.6 1.0 CB C:ASP140 4.1 28.6 1.0 CE1 C:HIS61 4.3 42.9 1.0 OD1 C:ASP140 4.7 35.7 1.0 ND1 C:HIS61 4.7 42.3 1.0 CG C:GLN137 4.7 31.0 1.0 ND1 C:HIS54 4.8 46.6 1.0 O C:GLU136 4.8 29.3 1.0 CE1 C:HIS54 4.8 49.3 1.0 CG C:GLU103 4.8 29.1 1.0 CG C:GLU58 4.9 35.8 1.0 CA C:GLN137 4.9 26.8 1.0 OE1 C:GLU57 4.9 75.9 1.0

Magnesium binding site 7 out of 48 in the Crystal Structure of M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of M Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg176 b:51.0 occ:1.00 OE1 D:GLU58 2.0 36.9 1.0 OE1 D:GLU23 2.4 34.3 1.0 OE2 D:GLU23 2.5 36.8 1.0 ND1 D:HIS61 2.7 42.3 1.0 CD D:GLU23 2.8 34.1 1.0 CD D:GLU58 3.2 38.9 1.0 OE1 D:GLN137 3.4 38.5 1.0 CE1 D:HIS61 3.5 42.9 1.0 OE2 D:GLU58 3.7 43.1 1.0 CG D:HIS61 3.7 39.6 1.0 CG1 D:VAL106 3.8 22.1 1.0 MG D:MG177 4.0 51.0 1.0 CB D:HIS61 4.1 34.4 1.0 CG D:GLU23 4.3 29.8 1.0 CG D:GLU58 4.4 35.8 1.0 CD D:GLN137 4.5 33.3 1.0 NE2 D:HIS61 4.6 43.3 1.0 CA D:GLU58 4.7 33.9 1.0 CB D:GLU58 4.8 33.8 1.0 CD2 D:HIS61 4.8 40.8 1.0 CD2 D:TYR133 4.9 24.2 1.0

Magnesium binding site 8 out of 48 in the Crystal Structure of M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of M Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg177 b:51.0 occ:1.00 OD2 D:ASP140 2.5 37.2 1.0 OE2 D:GLU58 2.6 43.1 1.0 OE1 D:GLN137 2.7 38.5 1.0 OE1 D:GLU103 2.9 36.5 1.0 OE2 D:GLU103 3.2 35.1 1.0 CD D:GLU103 3.4 32.4 1.0 CD D:GLU58 3.5 38.9 1.0 CD D:GLN137 3.6 33.3 1.0 CG D:ASP140 3.6 33.3 1.0 OE1 D:GLU58 3.7 36.9 1.0 MG D:MG176 4.0 51.0 1.0 NE2 D:GLN137 4.0 32.6 1.0 CB D:ASP140 4.1 28.6 1.0 CE1 D:HIS61 4.3 42.9 1.0 OD1 D:ASP140 4.7 35.7 1.0 ND1 D:HIS61 4.7 42.3 1.0 CG D:GLN137 4.7 31.0 1.0 O D:GLU136 4.8 29.3 1.0 ND1 D:HIS54 4.8 46.6 1.0 CE1 D:HIS54 4.8 49.3 1.0 CG D:GLU103 4.8 29.1 1.0 CG D:GLU58 4.9 35.8 1.0 CA D:GLN137 4.9 26.8 1.0 OE1 D:GLU57 4.9 75.9 1.0

Magnesium binding site 9 out of 48 in the Crystal Structure of M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of M Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg176 b:51.0 occ:1.00 OE1 E:GLU58 2.0 36.9 1.0 OE1 E:GLU23 2.4 34.3 1.0 OE2 E:GLU23 2.5 36.8 1.0 ND1 E:HIS61 2.7 42.3 1.0 CD E:GLU23 2.8 34.1 1.0 CD E:GLU58 3.2 38.9 1.0 OE1 E:GLN137 3.4 38.5 1.0 CE1 E:HIS61 3.5 42.9 1.0 OE2 E:GLU58 3.7 43.1 1.0 CG E:HIS61 3.7 39.6 1.0 CG1 E:VAL106 3.8 22.1 1.0 MG E:MG177 4.0 51.0 1.0 CB E:HIS61 4.1 34.4 1.0 CG E:GLU23 4.3 29.8 1.0 CG E:GLU58 4.4 35.8 1.0 CD E:GLN137 4.5 33.3 1.0 NE2 E:HIS61 4.6 43.3 1.0 CA E:GLU58 4.7 33.9 1.0 CB E:GLU58 4.8 33.8 1.0 CD2 E:HIS61 4.8 40.8 1.0 CD2 E:TYR133 4.9 24.2 1.0

Magnesium binding site 10 out of 48 in the Crystal Structure of M Ferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of M Ferritin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg177 b:51.0 occ:1.00 OD2 E:ASP140 2.5 37.2 1.0 OE2 E:GLU58 2.6 43.1 1.0 OE1 E:GLN137 2.7 38.5 1.0 OE1 E:GLU103 2.9 36.5 1.0 OE2 E:GLU103 3.2 35.1 1.0 CD E:GLU103 3.4 32.4 1.0 CD E:GLU58 3.5 38.9 1.0 CD E:GLN137 3.6 33.3 1.0 CG E:ASP140 3.6 33.3 1.0 OE1 E:GLU58 3.7 36.9 1.0 MG E:MG176 4.0 51.0 1.0 NE2 E:GLN137 4.0 32.6 1.0 CB E:ASP140 4.1 28.6 1.0 CE1 E:HIS61 4.3 42.9 1.0 OD1 E:ASP140 4.7 35.7 1.0 ND1 E:HIS61 4.7 42.3 1.0 CG E:GLN137 4.7 31.0 1.0 O E:GLU136 4.8 29.3 1.0 ND1 E:HIS54 4.8 46.6 1.0 CE1 E:HIS54 4.8 49.3 1.0 CG E:GLU103 4.8 29.1 1.0 CG E:GLU58 4.9 35.8 1.0 CA E:GLN137 4.9 26.8 1.0 OE1 E:GLU57 4.9 75.9 1.0

Y.Ha, D.Shi, W.Small, E.C.Theil, N.M.Allewell. Crystal Structure of Bullfrog M Ferritin at 2.8 A Resolution: Analysis of Subunit Interactions and the Binuclear Metal Center J.Biol.Inorg.Chem. V. 4 243 1999.
ISSN: ISSN 0949-8257
PubMed: 10439069
DOI: 10.1007/S007750050310