Magnesium in PDB 1mv5: Crystal Structure of Lmra Atp-Binding Domain

The structure of Crystal Structure of Lmra Atp-Binding Domain, PDB code: 1mv5 was solved by Y.Yuan, H.Chen, D.Patel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 3.10
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	141.866, 141.866, 120.965, 90.00, 90.00, 120.00
R / Rfree (%)	25.1 / 28.3

The binding sites of Magnesium atom in the Crystal Structure of Lmra Atp-Binding Domain (pdb code 1mv5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Lmra Atp-Binding Domain, PDB code: 1mv5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Lmra Atp-Binding Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Lmra Atp-Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1601 b:76.4 occ:1.00 OD1 C:ASP2353 2.7 78.8 1.0 CG C:ASP2353 3.5 69.2 1.0 OD2 C:ASP2353 3.5 71.8 1.0 N7 B:ADP1600 3.5 51.6 1.0 C8 B:ADP1600 3.8 50.3 1.0 OD2 A:ASP468 3.8 77.2 1.0 C5 B:ADP1600 4.5 53.0 1.0 O B:HOH4030 4.5 45.7 1.0 CG A:ASP468 4.7 70.8 1.0 N9 B:ADP1600 4.8 46.5 1.0 N1 C:ATP2601 4.8 37.3 1.0 O1A B:ADP1600 4.8 25.3 1.0 CB C:ASP2353 4.9 58.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Lmra Atp-Binding Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Lmra Atp-Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg3601 b:36.8 occ:1.00 O1A D:ADP3600 2.5 22.4 1.0 O D:HOH4078 2.6 27.7 1.0 O D:HOH4046 3.1 39.7 1.0 O D:HOH4041 3.3 28.4 1.0 OG D:SER3383 3.3 43.5 1.0 CB D:SER3383 3.5 33.0 1.0 PA D:ADP3600 3.6 25.9 1.0 O2A D:ADP3600 4.0 17.0 1.0 O2B D:ADP3600 4.1 32.9 1.0 O1B D:ADP3600 4.2 42.5 1.0 O3A D:ADP3600 4.2 32.4 1.0 PB D:ADP3600 4.5 35.7 1.0 CA D:SER3383 4.9 31.8 1.0 O5' D:ADP3600 5.0 20.9 1.0

Y.Yuan, H.Chen, D.Patel. Crystal Structure of Lmra Atp-Binding Domain Reveals the Two-Site Alternating Mechanism at Molecular Level To Be Published.