Magnesium in PDB 1n6m: Rotation of the Stalk/Neck and One Head in A New Crystal Structure of the Kinesin Motor Protein, Ncd

The structure of Rotation of the Stalk/Neck and One Head in A New Crystal Structure of the Kinesin Motor Protein, Ncd, PDB code: 1n6m was solved by M.Yun, C.E.Bronner, C.-G.Park, S.-S.Cha, H.-W.Park, S.A.Endow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	162.600, 66.600, 94.800, 90.00, 98.00, 90.00
R / Rfree (%)	26 / 30.2

The binding sites of Magnesium atom in the Rotation of the Stalk/Neck and One Head in A New Crystal Structure of the Kinesin Motor Protein, Ncd (pdb code 1n6m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Rotation of the Stalk/Neck and One Head in A New Crystal Structure of the Kinesin Motor Protein, Ncd, PDB code: 1n6m:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Rotation of the Stalk/Neck and One Head in A New Crystal Structure of the Kinesin Motor Protein, Ncd


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rotation of the Stalk/Neck and One Head in A New Crystal Structure of the Kinesin Motor Protein, Ncd within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg996 b:65.5 occ:1.00 OG1 A:THR441 2.5 48.8 1.0 O3B A:ADP998 2.7 73.4 1.0 O1B A:ADP998 2.9 72.6 1.0 PB A:ADP998 3.2 73.0 1.0 O3A A:ADP998 3.8 71.4 1.0 CB A:THR441 3.8 47.0 1.0 N A:THR441 4.5 46.4 1.0 NZ A:LYS440 4.5 45.9 1.0 O2A A:ADP998 4.6 73.0 1.0 CG2 A:THR441 4.7 43.5 1.0 CB A:SER551 4.7 70.4 1.0 CA A:THR441 4.7 46.2 1.0 O2B A:ADP998 4.7 73.1 1.0 OD1 A:ASP580 4.8 50.8 1.0 OD2 A:ASP580 4.8 49.9 1.0 PA A:ADP998 4.9 70.1 1.0 O A:HOH6247 5.0 51.3 1.0

Magnesium binding site 2 out of 2 in the Rotation of the Stalk/Neck and One Head in A New Crystal Structure of the Kinesin Motor Protein, Ncd


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Rotation of the Stalk/Neck and One Head in A New Crystal Structure of the Kinesin Motor Protein, Ncd within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg997 b:61.1 occ:1.00 OG1 B:THR441 2.5 54.8 1.0 O3B B:ADP999 2.6 94.5 1.0 O1B B:ADP999 3.4 94.1 1.0 PB B:ADP999 3.6 95.3 1.0 OG B:SER550 3.8 83.8 1.0 CB B:THR441 3.8 55.3 1.0 OD1 B:ASP580 4.1 71.9 1.0 OD2 B:ASP580 4.2 69.1 1.0 CG B:ASP580 4.6 69.3 1.0 O B:SER550 4.6 82.2 1.0 CG2 B:THR441 4.6 54.4 1.0 O3A B:ADP999 4.7 92.7 1.0 N B:THR441 4.7 56.1 1.0 O2B B:ADP999 4.8 93.4 1.0 CA B:THR441 4.8 56.0 1.0 CB B:SER550 4.8 84.2 1.0

M.Yun, C.E.Bronner, C.-G.Park, S.-S.Cha, H.-W.Park, S.A.Endow. Rotation of the Stalk/Neck and One Head in A New Crystal Structure of the Kinesin Motor Protein, Ncd Embo J. V. 22 1 2003.
ISSN: ISSN 0261-4189
PubMed: 14532111
DOI: 10.1093/EMBOJ/CDG531