Magnesium in PDB 1nc7: Crystal Structure of Thermotoga Maritima 1070

The structure of Crystal Structure of Thermotoga Maritima 1070, PDB code: 1nc7 was solved by Y.Kim, A.Joachimiak, A.Edwards, T.Skarina, A.Savchenko, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.40 / 1.55
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	54.435, 54.453, 55.178, 63.18, 62.27, 89.81
R / Rfree (%)	17 / 19

The structure of Crystal Structure of Thermotoga Maritima 1070 also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Thermotoga Maritima 1070 (pdb code 1nc7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Thermotoga Maritima 1070, PDB code: 1nc7:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of Thermotoga Maritima 1070


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Thermotoga Maritima 1070 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1501 b:4.6 occ:1.00 O C:THR107 2.3 2.7 1.0 O B:THR107 2.3 2.7 1.0 O D:THR107 2.3 2.7 1.0 O A:THR107 2.3 2.5 1.0 CL D:CL1402 2.7 16.0 1.0 CL A:CL1401 3.1 4.1 1.0 C C:THR107 3.5 2.2 1.0 C B:THR107 3.5 2.4 1.0 C D:THR107 3.5 2.1 1.0 C A:THR107 3.6 2.4 1.0 N B:THR107 4.3 2.2 1.0 N C:THR107 4.3 2.9 1.0 N D:THR107 4.3 1.8 1.0 CA C:THR108 4.3 2.7 1.0 CA D:THR108 4.3 2.4 1.0 N A:THR107 4.3 3.1 1.0 CA B:THR108 4.4 3.0 1.0 CG2 C:THR107 4.4 3.6 1.0 N C:THR108 4.4 2.3 1.0 CA A:THR108 4.4 2.4 1.0 CG2 B:THR107 4.4 3.8 1.0 N D:THR108 4.4 2.7 1.0 N B:THR108 4.4 3.4 1.0 CG2 D:THR107 4.4 3.3 1.0 CG2 A:THR107 4.4 3.2 1.0 CB D:THR108 4.4 2.7 1.0 CB C:THR108 4.4 2.9 1.0 N A:THR108 4.4 3.8 1.0 CB B:THR108 4.4 3.0 1.0 CB A:THR108 4.5 2.8 1.0 CA C:THR107 4.5 2.7 1.0 CA B:THR107 4.5 2.6 1.0 CA D:THR107 4.5 2.0 1.0 CA A:THR107 4.5 2.6 1.0 OG1 B:THR108 4.9 3.2 1.0 OG1 D:THR108 4.9 3.3 1.0 OG1 C:THR108 4.9 3.9 1.0 OG1 A:THR108 4.9 3.4 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of Thermotoga Maritima 1070


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Thermotoga Maritima 1070 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1502 b:6.2 occ:1.00 O A:LEU105 2.3 3.6 1.0 O D:LEU105 2.3 2.9 1.0 O C:LEU105 2.3 2.9 1.0 O B:LEU105 2.3 4.2 1.0 C A:LEU105 3.5 3.6 1.0 C D:LEU105 3.5 3.3 1.0 C B:LEU105 3.5 3.5 1.0 C C:LEU105 3.5 3.2 1.0 OG1 D:THR104 4.1 4.4 1.0 OG1 B:THR104 4.1 6.2 1.0 OG1 A:THR104 4.1 6.4 1.0 OG1 C:THR104 4.2 6.1 1.0 CA D:MSE106 4.2 3.1 1.0 CA B:MSE106 4.3 3.9 1.0 CA C:MSE106 4.3 3.3 1.0 CA A:MSE106 4.3 4.2 1.0 CL A:CL1401 4.3 4.1 1.0 N A:MSE106 4.3 4.5 1.0 N D:MSE106 4.3 4.4 1.0 N C:MSE106 4.3 4.6 1.0 N B:MSE106 4.3 4.5 1.0 N D:LEU105 4.4 3.7 1.0 N A:LEU105 4.4 4.2 1.0 N B:LEU105 4.5 3.9 1.0 N C:LEU105 4.5 3.4 1.0 CA A:LEU105 4.5 4.4 1.0 CA D:LEU105 4.5 4.0 1.0 CA B:LEU105 4.6 3.8 1.0 CA C:LEU105 4.6 4.3 1.0 MG A:MG1504 4.6 20.9 1.0 CB B:MSE106 4.6 5.1 1.0 CB D:MSE106 4.6 5.8 1.0 CB C:MSE106 4.6 5.3 1.0 CB A:MSE106 4.6 5.5 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of Thermotoga Maritima 1070


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Thermotoga Maritima 1070 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1503 b:41.4 occ:1.00 MG A:MG1504 2.7 20.9 1.0 O B:HOH1354 2.9 10.4 1.0 O C:HOH1367 2.9 10.4 1.0 O D:HOH1464 3.1 12.9 1.0 O A:HOH1559 3.1 12.2 1.0 O C:TYR103 3.2 6.4 1.0 O B:TYR103 3.2 7.6 1.0 O D:TYR103 3.2 6.5 1.0 O A:TYR103 3.4 7.1 1.0 O D:HOH1514 3.9 39.3 1.0 O1 D:FMT1304 4.2 28.3 1.0 C C:TYR103 4.2 6.3 1.0 C B:TYR103 4.3 6.4 1.0 C D:TYR103 4.3 5.2 1.0 CB C:THR104 4.3 6.9 1.0 CB D:THR104 4.4 5.2 1.0 C A:TYR103 4.5 6.5 1.0 CB B:THR104 4.5 6.4 1.0 OG1 C:THR104 4.5 6.1 1.0 CB A:THR104 4.6 6.6 1.0 OG1 D:THR104 4.6 4.4 1.0 CA C:THR104 4.6 4.7 1.0 OG1 B:THR104 4.7 6.2 1.0 CA D:THR104 4.7 3.3 1.0 OG1 A:THR104 4.7 6.4 1.0 CA B:THR104 4.7 4.4 1.0 C D:FMT1304 4.8 28.9 1.0 N C:THR104 4.9 5.0 1.0 CA A:THR104 4.9 5.2 1.0 N C:TYR103 4.9 6.8 1.0 N D:THR104 4.9 3.8 1.0 N D:TYR103 5.0 6.5 1.0 N B:THR104 5.0 4.8 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of Thermotoga Maritima 1070


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Thermotoga Maritima 1070 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1504 b:20.9 occ:1.00 MG A:MG1503 2.7 41.4 1.0 OG1 C:THR104 2.7 6.1 1.0 OG1 B:THR104 2.8 6.2 1.0 OG1 D:THR104 2.8 4.4 1.0 OG1 A:THR104 2.8 6.4 1.0 CB D:THR104 3.3 5.2 1.0 CB B:THR104 3.4 6.4 1.0 CB C:THR104 3.4 6.9 1.0 CB A:THR104 3.4 6.6 1.0 CA D:THR104 3.8 3.3 1.0 CA B:THR104 3.8 4.4 1.0 CA C:THR104 3.8 4.7 1.0 CA A:THR104 3.8 5.2 1.0 O D:TYR103 3.9 6.5 1.0 O B:TYR103 4.0 7.6 1.0 O A:TYR103 4.0 7.1 1.0 O C:TYR103 4.0 6.4 1.0 N D:LEU105 4.5 3.7 1.0 N C:LEU105 4.6 3.4 1.0 N A:LEU105 4.6 4.2 1.0 N B:LEU105 4.6 3.9 1.0 MG A:MG1502 4.6 6.2 1.0 C D:THR104 4.7 3.8 1.0 C D:TYR103 4.8 5.2 1.0 CG2 D:THR104 4.8 6.9 1.0 N D:THR104 4.8 3.8 1.0 C B:THR104 4.8 3.7 1.0 C C:THR104 4.8 4.8 1.0 C A:THR104 4.8 5.1 1.0 CG2 C:THR104 4.8 7.7 1.0 C B:TYR103 4.8 6.4 1.0 CG2 B:THR104 4.8 7.5 1.0 N B:THR104 4.8 4.8 1.0 CG2 A:THR104 4.8 8.5 1.0 C A:TYR103 4.8 6.5 1.0 N C:THR104 4.8 5.0 1.0 N A:THR104 4.8 4.4 1.0 C C:TYR103 4.8 6.3 1.0 O B:HOH1354 5.0 10.4 1.0 O D:HOH1464 5.0 12.9 1.0

Y.Kim, A.Joachimiak, A.Edwards, T.Skarina, A.Savchenko. Crystal Structure Analysis of Thermotoga Maritima Hypothetical Protein TM1070 To Be Published.