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Magnesium in PDB 1nhh: Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium

Protein crystallography data

The structure of Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium, PDB code: 1nhh was solved by X.Hu, M.Machius, W.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.40
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.747, 71.171, 189.615, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 24.9

Other elements in 1nhh:

The structure of Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium also contains other interesting chemical elements:

Rubidium (Rb) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium (pdb code 1nhh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium, PDB code: 1nhh:

Magnesium binding site 1 out of 1 in 1nhh

Go back to Magnesium Binding Sites List in 1nhh
Magnesium binding site 1 out of 1 in the Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of N-Terminal 40KD Mutl Protein (LN40) Complex with Adpnp and One Rubidium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg370

b:26.3
occ:1.00
OD1 A:ASN33 2.2 18.4 1.0
O A:HOH680 2.3 14.3 1.0
O A:HOH681 2.3 22.5 1.0
O2G A:ANP380 2.4 17.4 1.0
O1A A:ANP380 2.4 18.1 1.0
O2B A:ANP380 2.5 17.3 1.0
CG A:ASN33 3.2 19.1 1.0
PB A:ANP380 3.3 18.2 1.0
PG A:ANP380 3.5 18.6 1.0
PA A:ANP380 3.5 18.6 1.0
O A:HOH606 3.5 19.5 1.0
ND2 A:ASN33 3.6 17.4 1.0
O3A A:ANP380 3.6 19.1 1.0
N3B A:ANP380 3.7 16.2 1.0
NZ A:LYS79 3.8 15.5 1.0
OE1 A:GLU29 4.1 19.8 1.0
CA A:GLY93 4.2 16.7 1.0
CB A:ALA98 4.2 17.7 1.0
O A:GLU29 4.3 19.7 1.0
O5' A:ANP380 4.3 18.6 1.0
O3G A:ANP380 4.4 16.4 1.0
O1G A:ANP380 4.4 21.5 1.0
CB A:ASN33 4.4 16.7 1.0
CA A:ASN33 4.6 16.9 1.0
O1B A:ANP380 4.7 14.2 1.0
N A:ASN33 4.8 14.9 1.0
O2A A:ANP380 4.8 19.1 1.0
N A:GLY93 4.9 14.4 1.0

Reference:

X.Hu, M.Machius, W.Yang. Monovalent Cation Dependence and Preference of Ghkl Atpases and Kinases Febs Lett. V. 544 268 2003.
ISSN: ISSN 0014-5793
PubMed: 12782329
DOI: 10.1016/S0014-5793(03)00519-2
Page generated: Mon Dec 14 06:32:43 2020

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