Magnesium in PDB 1nkz: Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
Protein crystallography data
The structure of Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution, PDB code: 1nkz
was solved by
M.Z.Papiz,
S.M.Prince,
T.Howard,
R.J.Cogdell,
N.W.Isaacs,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
8.00 /
2.00
|
|
Space group
|
H 3 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
117.052,
117.052,
298.438,
90.00,
90.00,
120.00
|
|
R / Rfree (%)
|
16.9 /
19
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
(pdb code 1nkz). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the
Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution, PDB code: 1nkz:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Magnesium binding site 1 out
of 9 in 1nkz
Go back to
Magnesium Binding Sites List in 1nkz
Magnesium binding site 1 out
of 9 in the Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg301
b:16.2
occ:1.00
|
MG
|
A:BCL301
|
0.0
|
16.2
|
1.0
|
|
NB
|
A:BCL301
|
2.0
|
15.7
|
1.0
|
|
ND
|
A:BCL301
|
2.1
|
18.0
|
1.0
|
|
NC
|
A:BCL301
|
2.1
|
17.3
|
1.0
|
|
NA
|
A:BCL301
|
2.2
|
17.0
|
1.0
|
|
NE2
|
A:HIS31
|
2.3
|
13.9
|
1.0
|
|
C4D
|
A:BCL301
|
3.0
|
15.7
|
1.0
|
|
C4B
|
A:BCL301
|
3.0
|
16.1
|
1.0
|
|
C1B
|
A:BCL301
|
3.0
|
15.6
|
1.0
|
|
C1C
|
A:BCL301
|
3.1
|
14.7
|
1.0
|
|
C4A
|
A:BCL301
|
3.2
|
15.9
|
1.0
|
|
C1D
|
A:BCL301
|
3.2
|
14.4
|
1.0
|
|
C4C
|
A:BCL301
|
3.2
|
14.4
|
1.0
|
|
CE1
|
A:HIS31
|
3.2
|
16.5
|
1.0
|
|
C1A
|
A:BCL301
|
3.2
|
16.1
|
1.0
|
|
CD2
|
A:HIS31
|
3.3
|
14.2
|
1.0
|
|
CHC
|
A:BCL301
|
3.4
|
15.2
|
1.0
|
|
CHB
|
A:BCL301
|
3.5
|
15.1
|
1.0
|
|
CHA
|
A:BCL301
|
3.6
|
16.0
|
1.0
|
|
CHD
|
A:BCL301
|
3.6
|
14.1
|
1.0
|
|
C12
|
A:RG1404
|
4.2
|
46.9
|
0.5
|
|
C3D
|
A:BCL301
|
4.3
|
14.2
|
1.0
|
|
C3B
|
A:BCL301
|
4.3
|
15.0
|
1.0
|
|
C2B
|
A:BCL301
|
4.3
|
14.3
|
1.0
|
|
C11
|
A:RG1404
|
4.3
|
44.7
|
0.5
|
|
C10
|
A:RG1404
|
4.4
|
40.4
|
0.5
|
|
ND1
|
A:HIS31
|
4.4
|
13.7
|
1.0
|
|
CMD
|
B:BCL302
|
4.4
|
15.4
|
1.0
|
|
CG
|
A:HIS31
|
4.4
|
14.4
|
1.0
|
|
C2C
|
A:BCL301
|
4.4
|
13.3
|
1.0
|
|
C2D
|
A:BCL301
|
4.5
|
13.7
|
1.0
|
|
C3C
|
A:BCL301
|
4.5
|
14.5
|
1.0
|
|
C3A
|
A:BCL301
|
4.5
|
15.5
|
1.0
|
|
C2A
|
A:BCL301
|
4.6
|
16.2
|
1.0
|
|
CM5
|
A:RG1404
|
4.7
|
56.6
|
0.5
|
|
C13
|
A:RG1404
|
4.9
|
52.4
|
0.5
|
|
CBD
|
A:BCL301
|
5.0
|
18.4
|
1.0
|
|
Magnesium binding site 2 out
of 9 in 1nkz
Go back to
Magnesium Binding Sites List in 1nkz
Magnesium binding site 2 out
of 9 in the Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg307
b:17.3
occ:1.00
|
MG
|
A:BCL307
|
0.0
|
17.3
|
1.0
|
|
ON2
|
A:CXM1
|
2.0
|
17.1
|
1.0
|
|
NB
|
A:BCL307
|
2.1
|
15.8
|
1.0
|
|
ND
|
A:BCL307
|
2.1
|
16.5
|
1.0
|
|
NC
|
A:BCL307
|
2.1
|
15.8
|
1.0
|
|
NA
|
A:BCL307
|
2.1
|
16.2
|
1.0
|
|
C4D
|
A:BCL307
|
3.0
|
17.8
|
1.0
|
|
C4B
|
A:BCL307
|
3.1
|
14.8
|
1.0
|
|
C1B
|
A:BCL307
|
3.1
|
14.2
|
1.0
|
|
CN
|
A:CXM1
|
3.1
|
17.2
|
1.0
|
|
C1C
|
A:BCL307
|
3.1
|
16.9
|
1.0
|
|
C4A
|
A:BCL307
|
3.2
|
16.0
|
1.0
|
|
C1D
|
A:BCL307
|
3.2
|
15.3
|
1.0
|
|
C4C
|
A:BCL307
|
3.2
|
15.8
|
1.0
|
|
C1A
|
A:BCL307
|
3.2
|
14.7
|
1.0
|
|
CHC
|
A:BCL307
|
3.5
|
16.4
|
1.0
|
|
N
|
A:CXM1
|
3.5
|
15.8
|
1.0
|
|
CHB
|
A:BCL307
|
3.6
|
15.1
|
1.0
|
|
CHA
|
A:BCL307
|
3.6
|
17.3
|
1.0
|
|
CHD
|
A:BCL307
|
3.6
|
15.8
|
1.0
|
|
O
|
A:HOH508
|
4.0
|
32.0
|
1.0
|
|
ON1
|
A:CXM1
|
4.2
|
15.2
|
1.0
|
|
C15
|
B:BCL302
|
4.3
|
24.2
|
1.0
|
|
C3D
|
A:BCL307
|
4.3
|
16.7
|
1.0
|
|
C3B
|
A:BCL307
|
4.3
|
13.1
|
1.0
|
|
C2B
|
A:BCL307
|
4.4
|
11.5
|
1.0
|
|
C2C
|
A:BCL307
|
4.5
|
17.8
|
1.0
|
|
C2D
|
A:BCL307
|
4.5
|
15.1
|
1.0
|
|
C3A
|
A:BCL307
|
4.5
|
14.3
|
1.0
|
|
C3C
|
A:BCL307
|
4.5
|
17.2
|
1.0
|
|
C2A
|
A:BCL307
|
4.6
|
16.8
|
1.0
|
|
C16
|
B:BCL302
|
4.7
|
22.2
|
1.0
|
|
C11
|
B:BCL302
|
4.8
|
30.4
|
1.0
|
|
C12
|
B:BCL302
|
4.8
|
28.6
|
1.0
|
|
CG
|
A:GLN3
|
4.8
|
16.7
|
1.0
|
|
CD1
|
B:ILE16
|
4.9
|
20.5
|
1.0
|
|
CA
|
A:CXM1
|
5.0
|
17.2
|
1.0
|
|
Magnesium binding site 3 out
of 9 in 1nkz
Go back to
Magnesium Binding Sites List in 1nkz
Magnesium binding site 3 out
of 9 in the Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg302
b:19.5
occ:1.00
|
MG
|
B:BCL302
|
0.0
|
19.5
|
1.0
|
|
NB
|
B:BCL302
|
2.0
|
14.7
|
1.0
|
|
ND
|
B:BCL302
|
2.1
|
17.4
|
1.0
|
|
NA
|
B:BCL302
|
2.1
|
18.5
|
1.0
|
|
NC
|
B:BCL302
|
2.2
|
17.9
|
1.0
|
|
NE2
|
B:HIS30
|
2.3
|
17.6
|
1.0
|
|
C4D
|
B:BCL302
|
3.0
|
16.8
|
1.0
|
|
C4B
|
B:BCL302
|
3.0
|
17.7
|
1.0
|
|
C1B
|
B:BCL302
|
3.0
|
16.6
|
1.0
|
|
C1C
|
B:BCL302
|
3.1
|
15.9
|
1.0
|
|
C4A
|
B:BCL302
|
3.2
|
18.4
|
1.0
|
|
C1A
|
B:BCL302
|
3.2
|
15.5
|
1.0
|
|
C1D
|
B:BCL302
|
3.2
|
16.6
|
1.0
|
|
CE1
|
B:HIS30
|
3.2
|
17.6
|
1.0
|
|
C4C
|
B:BCL302
|
3.3
|
14.1
|
1.0
|
|
CD2
|
B:HIS30
|
3.4
|
16.4
|
1.0
|
|
CHC
|
B:BCL302
|
3.4
|
14.8
|
1.0
|
|
CHB
|
B:BCL302
|
3.5
|
15.8
|
1.0
|
|
CHA
|
B:BCL302
|
3.5
|
15.8
|
1.0
|
|
CHD
|
B:BCL302
|
3.7
|
17.6
|
1.0
|
|
CMB
|
C:BCL303
|
4.2
|
17.2
|
1.0
|
|
CBB
|
C:BCL303
|
4.2
|
15.7
|
1.0
|
|
C3B
|
B:BCL302
|
4.3
|
14.2
|
1.0
|
|
C3D
|
B:BCL302
|
4.3
|
14.1
|
1.0
|
|
C2B
|
B:BCL302
|
4.3
|
12.7
|
1.0
|
|
ND1
|
B:HIS30
|
4.4
|
16.8
|
1.0
|
|
C2C
|
B:BCL302
|
4.5
|
16.2
|
1.0
|
|
C2D
|
B:BCL302
|
4.5
|
15.8
|
1.0
|
|
CG
|
B:HIS30
|
4.5
|
15.7
|
1.0
|
|
C3A
|
B:BCL302
|
4.5
|
17.0
|
1.0
|
|
C2A
|
B:BCL302
|
4.5
|
16.5
|
1.0
|
|
C3C
|
B:BCL302
|
4.6
|
15.3
|
1.0
|
|
C16
|
A:BCL307
|
4.8
|
18.9
|
1.0
|
|
CMD
|
A:BCL301
|
4.8
|
14.9
|
1.0
|
|
CAB
|
C:BCL303
|
4.9
|
14.8
|
1.0
|
|
C2B
|
C:BCL303
|
5.0
|
15.0
|
1.0
|
|
CBD
|
B:BCL302
|
5.0
|
16.8
|
1.0
|
|
Magnesium binding site 4 out
of 9 in 1nkz
Go back to
Magnesium Binding Sites List in 1nkz
Magnesium binding site 4 out
of 9 in the Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg303
b:16.5
occ:1.00
|
MG
|
C:BCL303
|
0.0
|
16.5
|
1.0
|
|
NB
|
C:BCL303
|
2.0
|
15.6
|
1.0
|
|
ND
|
C:BCL303
|
2.1
|
16.9
|
1.0
|
|
NC
|
C:BCL303
|
2.1
|
16.8
|
1.0
|
|
NA
|
C:BCL303
|
2.1
|
17.1
|
1.0
|
|
NE2
|
C:HIS31
|
2.3
|
16.3
|
1.0
|
|
C4D
|
C:BCL303
|
3.0
|
16.4
|
1.0
|
|
C4B
|
C:BCL303
|
3.0
|
16.0
|
1.0
|
|
C1B
|
C:BCL303
|
3.0
|
15.9
|
1.0
|
|
C1C
|
C:BCL303
|
3.0
|
15.2
|
1.0
|
|
C4A
|
C:BCL303
|
3.2
|
15.4
|
1.0
|
|
C1D
|
C:BCL303
|
3.2
|
14.2
|
1.0
|
|
C1A
|
C:BCL303
|
3.2
|
16.0
|
1.0
|
|
CD2
|
C:HIS31
|
3.3
|
12.3
|
1.0
|
|
C4C
|
C:BCL303
|
3.3
|
14.9
|
1.0
|
|
CE1
|
C:HIS31
|
3.3
|
15.6
|
1.0
|
|
CHC
|
C:BCL303
|
3.4
|
15.3
|
1.0
|
|
CHB
|
C:BCL303
|
3.5
|
15.6
|
1.0
|
|
CHA
|
C:BCL303
|
3.6
|
15.3
|
1.0
|
|
CHD
|
C:BCL303
|
3.7
|
15.1
|
1.0
|
|
C12
|
C:RG1405
|
4.2
|
46.9
|
0.5
|
|
C3B
|
C:BCL303
|
4.3
|
15.1
|
1.0
|
|
C3D
|
C:BCL303
|
4.3
|
14.7
|
1.0
|
|
C2B
|
C:BCL303
|
4.3
|
15.0
|
1.0
|
|
C11
|
C:RG1405
|
4.4
|
44.6
|
0.5
|
|
ND1
|
C:HIS31
|
4.4
|
15.0
|
1.0
|
|
C2C
|
C:BCL303
|
4.4
|
13.8
|
1.0
|
|
C10
|
C:RG1405
|
4.4
|
40.0
|
0.5
|
|
CMD
|
D:BCL304
|
4.4
|
16.0
|
1.0
|
|
CG
|
C:HIS31
|
4.4
|
14.2
|
1.0
|
|
C2D
|
C:BCL303
|
4.5
|
13.5
|
1.0
|
|
C3A
|
C:BCL303
|
4.5
|
15.3
|
1.0
|
|
C3C
|
C:BCL303
|
4.5
|
15.3
|
1.0
|
|
C2A
|
C:BCL303
|
4.6
|
16.7
|
1.0
|
|
CM5
|
C:RG1405
|
4.7
|
56.7
|
0.5
|
|
C13
|
C:RG1405
|
5.0
|
52.6
|
0.5
|
|
Magnesium binding site 5 out
of 9 in 1nkz
Go back to
Magnesium Binding Sites List in 1nkz
Magnesium binding site 5 out
of 9 in the Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg308
b:16.6
occ:1.00
|
MG
|
C:BCL308
|
0.0
|
16.6
|
1.0
|
|
ON2
|
C:CXM1
|
2.0
|
14.8
|
1.0
|
|
NB
|
C:BCL308
|
2.1
|
15.0
|
1.0
|
|
ND
|
C:BCL308
|
2.1
|
16.6
|
1.0
|
|
NA
|
C:BCL308
|
2.1
|
16.7
|
1.0
|
|
NC
|
C:BCL308
|
2.1
|
15.8
|
1.0
|
|
C4D
|
C:BCL308
|
3.0
|
18.6
|
1.0
|
|
C1B
|
C:BCL308
|
3.1
|
14.9
|
1.0
|
|
C4B
|
C:BCL308
|
3.1
|
15.1
|
1.0
|
|
CN
|
C:CXM1
|
3.1
|
16.0
|
1.0
|
|
C1C
|
C:BCL308
|
3.1
|
17.0
|
1.0
|
|
C4A
|
C:BCL308
|
3.2
|
15.1
|
1.0
|
|
C1D
|
C:BCL308
|
3.2
|
15.5
|
1.0
|
|
C1A
|
C:BCL308
|
3.2
|
14.9
|
1.0
|
|
C4C
|
C:BCL308
|
3.2
|
16.5
|
1.0
|
|
CHC
|
C:BCL308
|
3.5
|
16.6
|
1.0
|
|
CHB
|
C:BCL308
|
3.5
|
14.6
|
1.0
|
|
CHA
|
C:BCL308
|
3.5
|
17.4
|
1.0
|
|
N
|
C:CXM1
|
3.5
|
15.8
|
1.0
|
|
CHD
|
C:BCL308
|
3.6
|
15.8
|
1.0
|
|
O
|
C:HOH511
|
4.1
|
32.6
|
1.0
|
|
C15
|
D:BCL304
|
4.2
|
24.1
|
1.0
|
|
ON1
|
C:CXM1
|
4.2
|
14.8
|
1.0
|
|
C3D
|
C:BCL308
|
4.3
|
16.3
|
1.0
|
|
C3B
|
C:BCL308
|
4.3
|
14.2
|
1.0
|
|
C2B
|
C:BCL308
|
4.4
|
11.8
|
1.0
|
|
C2D
|
C:BCL308
|
4.5
|
15.1
|
1.0
|
|
C3A
|
C:BCL308
|
4.5
|
15.3
|
1.0
|
|
C2C
|
C:BCL308
|
4.5
|
18.1
|
1.0
|
|
C3C
|
C:BCL308
|
4.5
|
16.0
|
1.0
|
|
C2A
|
C:BCL308
|
4.5
|
16.4
|
1.0
|
|
C16
|
D:BCL304
|
4.6
|
22.4
|
1.0
|
|
C12
|
D:BCL304
|
4.8
|
28.9
|
1.0
|
|
C11
|
D:BCL304
|
4.8
|
30.4
|
1.0
|
|
CD1
|
D:ILE16
|
4.8
|
19.2
|
1.0
|
|
CG
|
C:GLN3
|
4.8
|
17.5
|
1.0
|
|
CA
|
C:CXM1
|
5.0
|
17.2
|
1.0
|
|
Magnesium binding site 6 out
of 9 in 1nkz
Go back to
Magnesium Binding Sites List in 1nkz
Magnesium binding site 6 out
of 9 in the Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg304
b:19.2
occ:1.00
|
MG
|
D:BCL304
|
0.0
|
19.2
|
1.0
|
|
NB
|
D:BCL304
|
2.0
|
16.0
|
1.0
|
|
ND
|
D:BCL304
|
2.1
|
17.9
|
1.0
|
|
NA
|
D:BCL304
|
2.1
|
18.1
|
1.0
|
|
NC
|
D:BCL304
|
2.2
|
18.4
|
1.0
|
|
NE2
|
D:HIS30
|
2.3
|
19.5
|
1.0
|
|
C4D
|
D:BCL304
|
3.0
|
16.4
|
1.0
|
|
C4B
|
D:BCL304
|
3.0
|
17.2
|
1.0
|
|
C1B
|
D:BCL304
|
3.0
|
15.8
|
1.0
|
|
C1C
|
D:BCL304
|
3.0
|
15.6
|
1.0
|
|
C4A
|
D:BCL304
|
3.2
|
18.4
|
1.0
|
|
C1D
|
D:BCL304
|
3.2
|
16.1
|
1.0
|
|
C1A
|
D:BCL304
|
3.2
|
15.9
|
1.0
|
|
CE1
|
D:HIS30
|
3.3
|
13.6
|
1.0
|
|
C4C
|
D:BCL304
|
3.3
|
13.9
|
1.0
|
|
CD2
|
D:HIS30
|
3.4
|
13.5
|
1.0
|
|
CHC
|
D:BCL304
|
3.4
|
14.4
|
1.0
|
|
CHB
|
D:BCL304
|
3.5
|
16.8
|
1.0
|
|
CHA
|
D:BCL304
|
3.6
|
15.3
|
1.0
|
|
CHD
|
D:BCL304
|
3.7
|
17.2
|
1.0
|
|
CBB
|
E:BCL305
|
4.2
|
14.9
|
1.0
|
|
CMB
|
E:BCL305
|
4.2
|
17.2
|
1.0
|
|
C3B
|
D:BCL304
|
4.3
|
13.9
|
1.0
|
|
C3D
|
D:BCL304
|
4.3
|
14.4
|
1.0
|
|
C2B
|
D:BCL304
|
4.3
|
13.2
|
1.0
|
|
ND1
|
D:HIS30
|
4.4
|
15.9
|
1.0
|
|
C2C
|
D:BCL304
|
4.4
|
15.7
|
1.0
|
|
C2D
|
D:BCL304
|
4.5
|
15.7
|
1.0
|
|
CG
|
D:HIS30
|
4.5
|
15.9
|
1.0
|
|
C3A
|
D:BCL304
|
4.5
|
16.6
|
1.0
|
|
C2A
|
D:BCL304
|
4.5
|
16.9
|
1.0
|
|
C3C
|
D:BCL304
|
4.6
|
15.3
|
1.0
|
|
C16
|
C:BCL308
|
4.8
|
19.2
|
1.0
|
|
CMD
|
C:BCL303
|
4.9
|
14.7
|
1.0
|
|
CAB
|
E:BCL305
|
5.0
|
15.5
|
1.0
|
|
C2B
|
E:BCL305
|
5.0
|
13.6
|
1.0
|
|
Magnesium binding site 7 out
of 9 in 1nkz
Go back to
Magnesium Binding Sites List in 1nkz
Magnesium binding site 7 out
of 9 in the Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg305
b:16.6
occ:1.00
|
MG
|
E:BCL305
|
0.0
|
16.6
|
1.0
|
|
NB
|
E:BCL305
|
2.0
|
15.7
|
1.0
|
|
ND
|
E:BCL305
|
2.1
|
17.4
|
1.0
|
|
NA
|
E:BCL305
|
2.1
|
17.1
|
1.0
|
|
NC
|
E:BCL305
|
2.1
|
16.3
|
1.0
|
|
NE2
|
E:HIS31
|
2.3
|
16.6
|
1.0
|
|
C4D
|
E:BCL305
|
3.0
|
15.8
|
1.0
|
|
C4B
|
E:BCL305
|
3.0
|
15.6
|
1.0
|
|
C1B
|
E:BCL305
|
3.0
|
15.6
|
1.0
|
|
C1C
|
E:BCL305
|
3.0
|
15.1
|
1.0
|
|
C4A
|
E:BCL305
|
3.1
|
15.6
|
1.0
|
|
C1D
|
E:BCL305
|
3.2
|
14.8
|
1.0
|
|
C1A
|
E:BCL305
|
3.2
|
15.8
|
1.0
|
|
CD2
|
E:HIS31
|
3.2
|
12.8
|
1.0
|
|
C4C
|
E:BCL305
|
3.3
|
14.8
|
1.0
|
|
CE1
|
E:HIS31
|
3.3
|
15.4
|
1.0
|
|
CHC
|
E:BCL305
|
3.4
|
15.1
|
1.0
|
|
CHB
|
E:BCL305
|
3.5
|
16.3
|
1.0
|
|
CHA
|
E:BCL305
|
3.6
|
16.1
|
1.0
|
|
CHD
|
E:BCL305
|
3.7
|
14.4
|
1.0
|
|
C12
|
E:RG1406
|
4.2
|
46.8
|
0.5
|
|
C3B
|
E:BCL305
|
4.3
|
15.2
|
1.0
|
|
C2B
|
E:BCL305
|
4.3
|
13.6
|
1.0
|
|
C3D
|
E:BCL305
|
4.3
|
13.8
|
1.0
|
|
C11
|
E:RG1406
|
4.4
|
44.4
|
0.5
|
|
ND1
|
E:HIS31
|
4.4
|
12.9
|
1.0
|
|
CG
|
E:HIS31
|
4.4
|
15.5
|
1.0
|
|
C10
|
E:RG1406
|
4.4
|
40.3
|
0.5
|
|
C2C
|
E:BCL305
|
4.4
|
14.2
|
1.0
|
|
CMD
|
F:BCL306
|
4.4
|
14.8
|
1.0
|
|
C2D
|
E:BCL305
|
4.5
|
13.7
|
1.0
|
|
C3A
|
E:BCL305
|
4.5
|
15.1
|
1.0
|
|
C3C
|
E:BCL305
|
4.5
|
14.4
|
1.0
|
|
C2A
|
E:BCL305
|
4.5
|
16.1
|
1.0
|
|
CM5
|
E:RG1406
|
4.8
|
56.4
|
0.5
|
|
Magnesium binding site 8 out
of 9 in 1nkz
Go back to
Magnesium Binding Sites List in 1nkz
Magnesium binding site 8 out
of 9 in the Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg309
b:16.9
occ:1.00
|
MG
|
E:BCL309
|
0.0
|
16.9
|
1.0
|
|
ON2
|
E:CXM1
|
2.0
|
15.8
|
1.0
|
|
NB
|
E:BCL309
|
2.0
|
15.9
|
1.0
|
|
ND
|
E:BCL309
|
2.1
|
16.8
|
1.0
|
|
NC
|
E:BCL309
|
2.1
|
16.1
|
1.0
|
|
NA
|
E:BCL309
|
2.1
|
15.9
|
1.0
|
|
C4D
|
E:BCL309
|
3.0
|
18.0
|
1.0
|
|
C4B
|
E:BCL309
|
3.1
|
14.7
|
1.0
|
|
C1B
|
E:BCL309
|
3.1
|
14.5
|
1.0
|
|
CN
|
E:CXM1
|
3.1
|
17.1
|
1.0
|
|
C1C
|
E:BCL309
|
3.1
|
16.9
|
1.0
|
|
C4A
|
E:BCL309
|
3.2
|
15.1
|
1.0
|
|
C1D
|
E:BCL309
|
3.2
|
15.4
|
1.0
|
|
C4C
|
E:BCL309
|
3.2
|
16.3
|
1.0
|
|
C1A
|
E:BCL309
|
3.2
|
15.2
|
1.0
|
|
CHC
|
E:BCL309
|
3.5
|
16.7
|
1.0
|
|
N
|
E:CXM1
|
3.5
|
16.6
|
1.0
|
|
CHB
|
E:BCL309
|
3.6
|
15.3
|
1.0
|
|
CHA
|
E:BCL309
|
3.6
|
17.6
|
1.0
|
|
CHD
|
E:BCL309
|
3.6
|
15.8
|
1.0
|
|
O
|
E:HOH513
|
4.0
|
34.7
|
1.0
|
|
ON1
|
E:CXM1
|
4.2
|
13.7
|
1.0
|
|
C15
|
F:BCL306
|
4.2
|
24.2
|
1.0
|
|
C3D
|
E:BCL309
|
4.3
|
16.3
|
1.0
|
|
C3B
|
E:BCL309
|
4.3
|
13.4
|
1.0
|
|
C2B
|
E:BCL309
|
4.4
|
11.3
|
1.0
|
|
C2D
|
E:BCL309
|
4.5
|
14.4
|
1.0
|
|
C2C
|
E:BCL309
|
4.5
|
18.0
|
1.0
|
|
C3A
|
E:BCL309
|
4.5
|
15.5
|
1.0
|
|
C3C
|
E:BCL309
|
4.5
|
16.8
|
1.0
|
|
C2A
|
E:BCL309
|
4.6
|
16.5
|
1.0
|
|
C16
|
F:BCL306
|
4.7
|
22.1
|
1.0
|
|
C11
|
F:BCL306
|
4.8
|
30.6
|
1.0
|
|
C12
|
F:BCL306
|
4.8
|
29.0
|
1.0
|
|
CG
|
E:GLN3
|
4.8
|
16.6
|
1.0
|
|
CD1
|
F:ILE16
|
4.9
|
20.3
|
1.0
|
|
CA
|
E:CXM1
|
5.0
|
17.1
|
1.0
|
|
Magnesium binding site 9 out
of 9 in 1nkz
Go back to
Magnesium Binding Sites List in 1nkz
Magnesium binding site 9 out
of 9 in the Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of LH2 B800-850 From Rps. Acidophila at 2.0 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg306
b:18.0
occ:1.00
|
MG
|
F:BCL306
|
0.0
|
18.0
|
1.0
|
|
NB
|
F:BCL306
|
2.0
|
16.2
|
1.0
|
|
ND
|
F:BCL306
|
2.1
|
17.7
|
1.0
|
|
NA
|
F:BCL306
|
2.1
|
18.6
|
1.0
|
|
NC
|
F:BCL306
|
2.1
|
17.8
|
1.0
|
|
NE2
|
F:HIS30
|
2.3
|
16.1
|
1.0
|
|
C4D
|
F:BCL306
|
3.0
|
17.4
|
1.0
|
|
C4B
|
F:BCL306
|
3.0
|
17.4
|
1.0
|
|
C1B
|
F:BCL306
|
3.1
|
15.3
|
1.0
|
|
C1C
|
F:BCL306
|
3.1
|
16.1
|
1.0
|
|
C1D
|
F:BCL306
|
3.2
|
16.3
|
1.0
|
|
C4A
|
F:BCL306
|
3.2
|
17.9
|
1.0
|
|
C1A
|
F:BCL306
|
3.2
|
15.4
|
1.0
|
|
CE1
|
F:HIS30
|
3.2
|
15.3
|
1.0
|
|
C4C
|
F:BCL306
|
3.3
|
14.5
|
1.0
|
|
CD2
|
F:HIS30
|
3.3
|
13.6
|
1.0
|
|
CHC
|
F:BCL306
|
3.4
|
15.4
|
1.0
|
|
CHA
|
F:BCL306
|
3.5
|
15.5
|
1.0
|
|
CHB
|
F:BCL306
|
3.6
|
16.4
|
1.0
|
|
CHD
|
F:BCL306
|
3.7
|
17.4
|
1.0
|
|
C3B
|
F:BCL306
|
4.3
|
13.5
|
1.0
|
|
C3D
|
F:BCL306
|
4.3
|
14.6
|
1.0
|
|
C2B
|
F:BCL306
|
4.4
|
13.5
|
1.0
|
|
ND1
|
F:HIS30
|
4.4
|
15.7
|
1.0
|
|
CG
|
F:HIS30
|
4.4
|
15.8
|
1.0
|
|
C2C
|
F:BCL306
|
4.5
|
15.9
|
1.0
|
|
C2D
|
F:BCL306
|
4.5
|
15.5
|
1.0
|
|
C3A
|
F:BCL306
|
4.5
|
16.7
|
1.0
|
|
C2A
|
F:BCL306
|
4.5
|
16.8
|
1.0
|
|
C3C
|
F:BCL306
|
4.5
|
16.2
|
1.0
|
|
C16
|
E:BCL309
|
4.8
|
19.2
|
1.0
|
|
CMD
|
E:BCL305
|
4.8
|
15.2
|
1.0
|
|
CBD
|
F:BCL306
|
5.0
|
16.6
|
1.0
|
|
Reference:
M.Z.Papiz,
S.M.Prince,
T.Howard,
R.J.Cogdell,
N.W.Isaacs.
The Structure and Thermal Motion of the B800-850 LH2 Complex From Rps. Acidophila at 2.0 A Resolution and 100K : New Structural Features and Functionally Relevant Motions. J.Mol.Biol. V. 326 1523 2003.
ISSN: ISSN 0022-2836
PubMed: 12595263
DOI: 10.1016/S0022-2836(03)00024-X
Page generated: Tue Aug 13 10:06:05 2024
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