Magnesium in PDB 1nly: Crystal Structure of the Traffic Atpase of the Helicobacter Pylori Type IV Secretion System in Complex with Atpgammas

The structure of Crystal Structure of the Traffic Atpase of the Helicobacter Pylori Type IV Secretion System in Complex with Atpgammas, PDB code: 1nly was solved by S.N.Savvides, H.J.Yeo, M.R.Beck, F.Blaesing, R.Lurz, E.Lanka, R.Buhrdorf, W.Fischer, R.Haas, G.Waksman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.99 / 2.80
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	110.820, 110.820, 230.910, 90.00, 90.00, 120.00
R / Rfree (%)	24.3 / 30.4

The binding sites of Magnesium atom in the Crystal Structure of the Traffic Atpase of the Helicobacter Pylori Type IV Secretion System in Complex with Atpgammas (pdb code 1nly). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Traffic Atpase of the Helicobacter Pylori Type IV Secretion System in Complex with Atpgammas, PDB code: 1nly:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Traffic Atpase of the Helicobacter Pylori Type IV Secretion System in Complex with Atpgammas


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Traffic Atpase of the Helicobacter Pylori Type IV Secretion System in Complex with Atpgammas within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:37.0 occ:1.00 OG1 A:THR185 1.7 21.4 1.0 O2B A:AGS402 2.6 59.0 1.0 O A:HOH1022 2.6 24.6 1.0 O3G A:AGS402 3.1 78.7 1.0 CB A:THR185 3.1 16.6 1.0 S1G A:AGS402 3.5 82.6 1.0 PG A:AGS402 3.6 76.8 1.0 O2A A:AGS402 3.6 65.4 1.0 PB A:AGS402 3.7 63.0 1.0 O3B A:AGS402 3.9 69.8 1.0 CG2 A:THR185 4.0 16.0 1.0 N A:THR185 4.0 17.2 1.0 CA A:THR185 4.0 16.4 1.0 OE1 A:GLU209 4.2 27.2 1.0 OE2 A:GLU209 4.4 32.9 1.0 OG1 A:THR271 4.4 19.5 1.0 O3A A:AGS402 4.5 62.4 1.0 PA A:AGS402 4.5 63.0 1.0 CD A:GLU209 4.7 30.3 1.0 O1A A:AGS402 4.9 61.2 1.0 O1B A:AGS402 4.9 61.8 1.0 O A:HOH1020 4.9 21.5 1.0 OE2 A:GLU248 5.0 46.1 1.0 CD A:GLU248 5.0 42.9 1.0 OE1 A:GLU248 5.0 36.8 1.0

S.N.Savvides, H.J.Yeo, M.R.Beck, F.Blaesing, R.Lurz, E.Lanka, R.Buhrdorf, W.Fischer, R.Haas, G.Waksman. VIRB11 Atpases Are Dynamic Hexameric Assemblies: New Insights Into Bacterial Type IV Secretion Embo J. V. 22 1969 2003.
ISSN: ISSN 0261-4189
PubMed: 12727865
DOI: 10.1093/EMBOJ/CDG223