Atomistry » Magnesium » PDB 1nq6-1nzw » 1nuw
Atomistry »
  Magnesium »
    PDB 1nq6-1nzw »
      1nuw »

Magnesium in PDB 1nuw: Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6

Enzymatic activity of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6

All present enzymatic activity of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6:
3.1.3.11;

Protein crystallography data

The structure of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6, PDB code: 1nuw was solved by J.Choe, C.V.Iancu, H.J.Fromm, R.B.Honzatko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.30
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.600, 83.017, 165.378, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6 (pdb code 1nuw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6, PDB code: 1nuw:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1nuw

Go back to Magnesium Binding Sites List in 1nuw
Magnesium binding site 1 out of 4 in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2497

b:19.1
occ:1.00
 O2 A:PO32496 2.0 23.8 1.0
OD2 A:ASP1118 2.0 19.4 1.0
O A:LEU1120 2.0 17.2 1.0
OE1 A:GLU1097 2.0 24.2 1.0
O A:HOH3056 2.2 20.1 1.0
O A:HOH3155 2.3 28.2 1.0
CG A:ASP1118 3.0 16.9 1.0
CD A:GLU1097 3.0 27.2 1.0
MG A:MG2498 3.1 25.6 1.0
P A:PO32496 3.1 19.1 1.0
C A:LEU1120 3.1 15.0 1.0
OD1 A:ASP1118 3.3 27.7 1.0
OE2 A:GLU1097 3.4 25.9 1.0
MG A:MG2500 3.7 21.2 0.5
CA A:ASP1121 3.8 18.0 1.0
MG A:MG2499 3.9 22.3 0.5
N A:ASP1121 3.9 15.7 1.0
O3 A:PO32496 3.9 27.4 1.0
N A:LEU1120 4.0 14.6 1.0
OE2 A:GLU1098 4.0 25.4 1.0
OD2 A:ASP1074 4.0 26.0 1.0
OD1 A:ASP1121 4.1 13.4 1.0
O1 A:PO32496 4.1 18.0 1.0
CA A:LEU1120 4.1 14.8 1.0
CB A:ASP1121 4.3 20.7 1.0
O A:HOH3193 4.3 34.1 1.0
CG A:GLU1097 4.4 19.9 1.0
CB A:ASP1118 4.4 15.8 1.0
CG A:ASP1121 4.5 20.0 1.0
CB A:GLU1097 4.6 17.1 1.0
CD A:PRO1119 4.6 18.9 1.0
CB A:LEU1120 4.7 15.8 0.7
CA A:ASP1118 4.8 15.0 1.0
C A:ASP1118 4.8 16.0 1.0
CB A:LEU1120 4.8 15.6 0.3
N A:PRO1119 4.8 16.6 1.0
CG A:ASP1074 5.0 22.9 1.0

Magnesium binding site 2 out of 4 in 1nuw

Go back to Magnesium Binding Sites List in 1nuw
Magnesium binding site 2 out of 4 in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2498

b:25.6
occ:1.00
 O2 A:PO32496 1.8 23.8 1.0
OD1 A:ASP1121 2.0 13.4 1.0
OE2 A:GLU1097 2.0 25.9 1.0
OD1 A:ASP1118 2.1 27.7 1.0
OE1 A:GLU1280 2.1 28.5 1.0
O3 A:PO32496 2.5 27.4 1.0
P A:PO32496 2.6 19.1 1.0
NH1 A:ARG1276 2.7 36.1 1.0
CG A:ASP1118 3.0 16.9 1.0
CD A:GLU1097 3.0 27.2 1.0
MG A:MG2497 3.1 19.1 1.0
CG A:ASP1121 3.1 20.0 1.0
OE1 A:GLU1097 3.2 24.2 1.0
CD A:GLU1280 3.2 17.6 1.0
OD2 A:ASP1118 3.3 19.4 1.0
CZ A:ARG1276 3.6 33.3 1.0
O1 A:PO32496 3.7 18.0 1.0
CB A:ASP1121 3.9 20.7 1.0
CG A:GLU1280 3.9 17.4 1.0
OE2 A:GLU1280 4.1 17.7 1.0
OD2 A:ASP1121 4.1 18.3 1.0
MG A:MG2500 4.2 21.2 0.5
C1 A:F6P2336 4.2 19.5 1.0
NH2 A:ARG1276 4.2 33.2 1.0
CB A:ASP1118 4.2 15.8 1.0
CA A:ASP1121 4.3 18.0 1.0
NE A:ARG1276 4.3 40.8 1.0
CG A:GLU1097 4.4 19.9 1.0
O1 A:F6P2336 4.4 27.3 1.0
O A:LEU1120 4.4 17.2 1.0
O A:HOH3155 4.5 28.2 1.0
O A:HOH3169 4.9 33.6 1.0

Magnesium binding site 3 out of 4 in 1nuw

Go back to Magnesium Binding Sites List in 1nuw
Magnesium binding site 3 out of 4 in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2499

b:22.3
occ:0.50
 O A:HOH3193 1.9 34.1 1.0
OE2 A:GLU1098 2.0 25.4 1.0
OD1 A:ASN1064 2.4 45.3 1.0
MG A:MG2500 2.7 21.2 0.5
OE1 A:GLU1097 2.7 24.2 1.0
O A:HOH3155 2.8 28.2 1.0
CD A:GLU1098 2.9 24.3 1.0
OE1 A:GLU1098 3.3 36.7 1.0
CD A:GLU1097 3.3 27.2 1.0
OD2 A:ASP1068 3.5 34.3 1.0
CG A:GLU1097 3.6 19.9 1.0
O A:HOH3056 3.6 20.1 1.0
CG A:ASN1064 3.7 52.4 1.0
MG A:MG2497 3.9 19.1 1.0
O A:HOH3115 4.0 30.8 1.0
O A:HOH3145 4.1 34.9 1.0
OD1 A:ASP1074 4.2 27.1 1.0
CB A:ASP1068 4.2 35.8 1.0
CG A:GLU1098 4.2 24.6 1.0
CG A:ASP1074 4.3 22.9 1.0
OD2 A:ASP1074 4.3 26.0 1.0
OE2 A:GLU1097 4.3 25.9 1.0
CG A:ASP1068 4.4 31.5 1.0
CB A:GLU1097 4.5 17.1 1.0
CB A:ASN1064 4.5 51.5 1.0
ND2 A:ASN1064 4.6 46.9 1.0
P A:PO32496 4.8 19.1 1.0
O A:GLU1097 4.8 19.9 1.0
O2 A:PO32496 4.8 23.8 1.0
O3 A:PO32496 4.9 27.4 1.0
C A:GLU1097 4.9 17.5 1.0
NH2 A:ARG1276 4.9 33.2 1.0
CB A:ASP1074 5.0 23.4 1.0

Magnesium binding site 4 out of 4 in 1nuw

Go back to Magnesium Binding Sites List in 1nuw
Magnesium binding site 4 out of 4 in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate and Phosphate at pH 9.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2500

b:21.2
occ:0.50
 OD2 A:ASP1068 1.9 34.3 1.0
O A:HOH3193 2.0 34.1 1.0
O A:HOH3115 2.0 30.8 1.0
O A:HOH3155 2.4 28.2 1.0
O3 A:PO32496 2.6 27.4 1.0
P A:PO32496 2.6 19.1 1.0
MG A:MG2499 2.7 22.3 0.5
CG A:ASP1068 3.0 31.5 1.0
OE1 A:GLU1097 3.3 24.2 1.0
O2 A:PO32496 3.4 23.8 1.0
CB A:ASP1068 3.6 35.8 1.0
O A:HOH3145 3.6 34.9 1.0
CD A:GLU1097 3.6 27.2 1.0
MG A:MG2497 3.7 19.1 1.0
O1 A:PO32496 3.8 18.0 1.0
OE2 A:GLU1097 3.9 25.9 1.0
OD1 A:ASN1064 4.0 45.3 1.0
NH2 A:ARG1276 4.0 33.2 1.0
OD1 A:ASP1068 4.1 35.5 1.0
OG A:SER1123 4.1 44.1 1.0
MG A:MG2498 4.2 25.6 1.0
NH1 A:ARG1276 4.3 36.1 1.0
CB A:SER1123 4.4 29.5 1.0
OE2 A:GLU1098 4.4 25.4 1.0
CG A:GLU1097 4.6 19.9 1.0
CZ A:ARG1276 4.6 33.3 1.0
O A:HOH3056 4.6 20.1 1.0
O1 A:F6P2336 4.8 27.3 1.0
OD2 A:ASP1074 4.9 26.0 1.0
OD1 A:ASP1074 4.9 27.1 1.0

Reference:

J.Y.Choe, C.V.Iancu, H.J.Fromm, R.B.Honzatko. Metaphosphate in the Active Site of Fructose-1,6-Bisphosphatase J.Biol.Chem. V. 278 16015 2003.
ISSN: ISSN 0021-9258
PubMed: 12595528
DOI: 10.1074/JBC.M212395200
Page generated: Tue Aug 13 10:23:49 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy