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Magnesium in PDB 1nv0: Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium

Enzymatic activity of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium

All present enzymatic activity of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium:
3.1.3.11;

Protein crystallography data

The structure of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium, PDB code: 1nv0 was solved by J.Choe, C.V.Iancu, H.J.Fromm, R.B.Honzatko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.00 / 1.80
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.074, 82.829, 165.173, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.7

Other elements in 1nv0:

The structure of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium also contains other interesting chemical elements:

Thallium (Tl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium (pdb code 1nv0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium, PDB code: 1nv0:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 1nv0

Go back to Magnesium Binding Sites List in 1nv0
Magnesium binding site 1 out of 3 in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2341

b:16.2
occ:1.00
 OE1 A:GLU1097 2.0 30.1 1.0
OD2 A:ASP1118 2.0 18.0 1.0
O2 A:PO42340 2.1 22.5 1.0
O A:HOH3056 2.2 18.0 1.0
O A:LEU1120 2.2 19.2 1.0
O4 A:PO42340 2.4 35.2 1.0
P A:PO42340 2.8 23.8 1.0
CG A:ASP1118 3.0 21.9 1.0
CD A:GLU1097 3.1 25.5 1.0
C A:LEU1120 3.2 12.3 1.0
OD1 A:ASP1118 3.4 26.4 1.0
OE2 A:GLU1097 3.7 51.9 1.0
O3 A:PO42340 3.8 20.5 1.0
TL A:TL2343 3.9 23.2 0.1
O A:HOH3201 3.9 30.9 1.0
MG A:MG2344 3.9 23.6 0.8
O1 A:PO42340 3.9 15.9 1.0
CA A:ASP1121 3.9 25.5 1.0
O A:HOH3166 3.9 39.6 1.0
N A:ASP1121 4.0 17.0 1.0
MG A:MG2342 4.0 38.9 0.3
N A:LEU1120 4.1 17.7 1.0
OE2 A:GLU1098 4.1 28.2 1.0
CA A:LEU1120 4.2 16.3 1.0
CG A:GLU1097 4.3 18.3 1.0
CB A:ASP1118 4.3 15.6 1.0
OD2 A:ASP1074 4.4 25.5 1.0
CB A:GLU1097 4.7 14.8 1.0
CA A:ASP1118 4.7 13.5 1.0
C A:ASP1118 4.7 9.8 1.0
CB A:LEU1120 4.8 15.8 1.0
CB A:ASP1121 4.8 27.3 1.0
CD A:PRO1119 4.8 15.4 1.0
N A:PRO1119 4.8 17.1 1.0
O1 A:F6P2339 4.9 14.4 0.4

Magnesium binding site 2 out of 3 in 1nv0

Go back to Magnesium Binding Sites List in 1nv0
Magnesium binding site 2 out of 3 in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2342

b:38.9
occ:0.30
 O4 A:PO42340 1.9 35.2 1.0
O3 A:PO42340 2.3 20.5 1.0
P A:PO42340 2.5 23.8 1.0
O A:HOH3166 2.7 39.6 1.0
O A:HOH3222 2.7 49.4 1.0
OD2 A:ASP1068 3.0 73.9 1.0
OG A:SER1123 3.1 35.7 1.0
O1 A:PO42340 3.4 15.9 1.0
CG A:ASP1068 3.4 47.9 1.0
O A:HOH3198 3.7 36.2 1.0
CB A:ASP1068 3.7 39.5 1.0
O2 A:PO42340 3.7 22.5 1.0
OE1 A:GLU1097 3.8 30.1 1.0
CB A:SER1123 3.8 29.7 1.0
MG A:MG2341 4.0 16.2 1.0
O A:HOH3201 4.1 30.9 1.0
OD1 A:ASP1068 4.3 58.8 1.0
CD A:GLU1097 4.3 25.5 1.0
O1 A:F6P2339 4.5 16.9 0.6
ND2 A:ASN1064 4.6 39.0 1.0
OE2 A:GLU1097 4.7 51.9 1.0
NH2 A:ARG1276 4.8 32.5 1.0
OE2 A:GLU1098 4.8 28.2 1.0
O A:HOH3056 4.8 18.0 1.0
OD1 A:ASP1074 4.9 26.6 1.0
O1 A:F6P2339 4.9 14.4 0.4

Magnesium binding site 3 out of 3 in 1nv0

Go back to Magnesium Binding Sites List in 1nv0
Magnesium binding site 3 out of 3 in the Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6- Phosphate, Phosphate and 1 Mm Thallium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2344

b:23.6
occ:0.84
 TL A:TL2343 0.1 23.2 0.1
OD1 A:ASP1121 2.0 15.8 1.0
OD1 A:ASP1118 2.1 26.4 1.0
O2 A:PO42340 2.2 22.5 1.0
OE1 A:GLU1280 2.2 24.2 1.0
O1 A:F6P2339 2.3 14.4 0.4
CG A:ASP1121 2.8 24.8 1.0
CB A:ASP1121 3.0 27.3 1.0
CG A:ASP1118 3.3 21.9 1.0
P A:PO42340 3.3 23.8 1.0
CA A:ASP1121 3.4 25.5 1.0
CD A:GLU1280 3.4 26.0 1.0
O1 A:PO42340 3.6 15.9 1.0
C1 A:F6P2339 3.7 18.3 1.0
OD2 A:ASP1118 3.7 18.0 1.0
O3 A:PO42340 3.8 20.5 1.0
MG A:MG2341 3.9 16.2 1.0
CG A:GLU1280 3.9 20.5 1.0
O3 A:F6P2339 3.9 12.3 1.0
OD2 A:ASP1121 4.0 16.7 1.0
N A:GLY1122 4.1 16.4 1.0
C A:ASP1121 4.2 23.1 1.0
OE2 A:GLU1097 4.3 51.9 1.0
C3 A:F6P2339 4.4 20.0 1.0
CD1 A:ILE1135 4.4 24.6 1.0
OE2 A:GLU1280 4.4 16.1 1.0
C2 A:F6P2339 4.5 20.5 1.0
CB A:ASP1118 4.5 15.6 1.0
N A:ASP1121 4.5 17.0 1.0
O4 A:PO42340 4.5 35.2 1.0
O1 A:F6P2339 4.6 16.9 0.6
O A:LEU1120 4.6 19.2 1.0
OE1 A:GLU1097 4.6 30.1 1.0
O2 A:F6P2339 4.8 20.1 1.0
CD A:GLU1097 4.9 25.5 1.0
C A:LEU1120 4.9 12.3 1.0

Reference:

J.Y.Choe, S.W.Nelson, H.J.Fromm, R.B.Honzatko. Interaction of Tl+ with Product Complexes of Fructose-1,6-Bisphosphatase J.Biol.Chem. V. 278 16008 2003.
ISSN: ISSN 0021-9258
PubMed: 12595529
DOI: 10.1074/JBC.M212394200
Page generated: Tue Aug 13 10:25:42 2024

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