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Magnesium in PDB 1nzi: Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S

Enzymatic activity of Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S

All present enzymatic activity of Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S:
3.4.21.42;

Protein crystallography data

The structure of Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S, PDB code: 1nzi was solved by L.A.Gregory, N.M.Thielens, G.J.Arlaud, J.C.Fontecilla-Camps, C.Gaboriaud, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.50
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.134, 47.499, 56.679, 87.74, 78.04, 75.67
R / Rfree (%) 21.6 / 23.4

Other elements in 1nzi:

The structure of Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S (pdb code 1nzi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S, PDB code: 1nzi:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1nzi

Go back to Magnesium Binding Sites List in 1nzi
Magnesium binding site 1 out of 2 in the Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:14.4
occ:1.00
O A:ASP98 2.2 22.2 1.0
OD1 A:ASP98 2.3 21.7 1.0
OE1 A:GLU45 2.3 18.3 1.0
O A:HOH1110 2.4 25.8 1.0
OD1 A:ASP53 2.5 14.8 1.0
O A:HOH1109 2.5 20.2 1.0
C A:ASP98 3.3 19.2 1.0
CG A:ASP53 3.3 15.6 1.0
CD A:GLU45 3.4 17.9 1.0
CG A:ASP98 3.5 19.3 1.0
OD2 A:ASP53 3.6 16.0 1.0
OE2 A:GLU45 3.8 21.4 1.0
N A:ASP98 3.8 16.9 1.0
O A:HOH1025 3.9 22.7 1.0
CA A:ASP98 3.9 18.2 1.0
CB A:ASP98 4.3 19.1 1.0
N A:ASP53 4.3 14.3 1.0
CB A:PHE99 4.3 22.7 1.0
N A:PHE99 4.4 22.6 1.0
CD2 A:PHE99 4.4 21.7 1.0
CB A:TYR52 4.4 16.5 1.0
OD2 A:ASP98 4.4 27.3 1.0
CB A:ASP53 4.6 16.9 1.0
O A:SER100 4.6 25.5 1.0
CG A:GLU45 4.7 18.9 1.0
CA A:PHE99 4.7 20.9 1.0
C A:PHE99 4.8 25.6 1.0
CB A:GLU45 4.9 15.1 1.0
CA A:ASP53 4.9 14.5 1.0
CG A:PHE99 4.9 23.6 1.0
C A:SER97 4.9 17.8 1.0
O A:PHE99 5.0 24.2 1.0

Magnesium binding site 2 out of 2 in 1nzi

Go back to Magnesium Binding Sites List in 1nzi
Magnesium binding site 2 out of 2 in the Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the CUB1-Egf Interaction Domain of Complement Protease C1S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1004

b:21.7
occ:1.00
O B:HOH1134 2.0 35.7 1.0
OD2 B:ASP53 2.5 18.6 1.0
OD1 B:ASP53 2.6 18.7 1.0
O B:HOH1122 2.6 23.2 1.0
O B:ASP98 2.6 28.0 1.0
OE1 B:GLU45 2.7 34.7 1.0
CG B:ASP53 2.8 16.2 1.0
CD B:GLU45 3.6 29.1 1.0
C B:ASP98 3.7 23.9 1.0
O B:HOH1140 3.9 37.7 1.0
N B:ASP98 3.9 18.6 1.0
O B:SER100 4.1 26.8 1.0
OE2 B:GLU45 4.2 29.2 0.0
CA B:ASP98 4.3 21.6 1.0
CB B:ASP53 4.3 14.5 1.0
O B:PHE99 4.4 27.7 1.0
CB B:GLU45 4.5 20.5 1.0
OG B:SER97 4.6 21.0 1.0
C B:SER100 4.7 23.8 1.0
CG B:GLU45 4.7 21.2 0.5
CB B:ASP98 4.7 25.6 1.0
C B:PHE99 4.7 25.0 1.0
OH B:TYR17 4.8 14.7 1.0
N B:PHE99 4.8 24.3 1.0
C B:SER97 4.8 19.2 1.0
O B:HOH1139 4.8 34.6 1.0
CA B:ASN101 4.8 20.9 1.0
CE1 B:TYR17 4.9 14.3 1.0

Reference:

L.A.Gregory, N.M.Thielens, G.J.Arlaud, J.C.Fontecilla-Camps, C.Gaboriaud. X-Ray Structure of the CA2+-Binding Interaction Domain of C1S. Insights Into the Assembly of the C1 Complex of Complement J.Biol.Chem. V. 278 32157 2003.
ISSN: ISSN 0021-9258
PubMed: 12788922
DOI: 10.1074/JBC.M305175200
Page generated: Mon Dec 14 06:33:56 2020

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