Magnesium in PDB 1ogv: Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides

The structure of Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides, PDB code: 1ogv was solved by G.Katona, U.Andreasson, E.M.Landau, L.-E.Andreasson, R.Neutze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.25 / 2.35
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	99.973, 99.973, 237.192, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 24.4

The structure of Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides also contains other interesting chemical elements:

Iron	(Fe)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Magnesium atom in the Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides (pdb code 1ogv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides, PDB code: 1ogv:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg1282 b:32.9 occ:1.00 MG L:BCL1282 0.0 32.9 1.0 NB L:BCL1282 1.9 32.5 1.0 NC L:BCL1282 2.0 32.5 1.0 NA L:BCL1282 2.1 32.9 1.0 ND L:BCL1282 2.2 32.5 1.0 NE2 L:HIS173 2.4 27.2 1.0 C4B L:BCL1282 2.9 31.9 1.0 C1B L:BCL1282 3.0 31.0 1.0 C1C L:BCL1282 3.0 31.6 1.0 CE1 L:HIS173 3.0 28.8 1.0 C4D L:BCL1282 3.1 32.8 1.0 C4A L:BCL1282 3.1 32.2 1.0 C4C L:BCL1282 3.1 32.7 1.0 C1D L:BCL1282 3.2 33.1 1.0 C1A L:BCL1282 3.3 31.7 1.0 CHC L:BCL1282 3.3 30.6 1.0 CHB L:BCL1282 3.3 31.9 1.0 CBB M:BCL1303 3.4 31.8 1.0 CHD L:BCL1282 3.5 31.7 1.0 CHA L:BCL1282 3.6 31.5 1.0 CAB M:BCL1303 3.6 35.2 1.0 CD2 L:HIS173 3.6 28.1 1.0 OBB M:BCL1303 3.7 36.4 1.0 C3B L:BCL1282 4.3 31.2 1.0 C2B L:BCL1282 4.3 30.9 1.0 ND1 L:HIS173 4.3 28.1 1.0 C3D L:BCL1282 4.3 32.5 1.0 C3B M:BCL1303 4.4 32.5 1.0 C2C L:BCL1282 4.4 31.6 1.0 C3C L:BCL1282 4.4 32.9 1.0 C2D L:BCL1282 4.4 33.6 1.0 C3A L:BCL1282 4.5 33.4 1.0 C2A L:BCL1282 4.5 30.8 1.0 CG L:HIS173 4.6 28.6 1.0 CD2 L:PHE167 4.6 36.8 1.0

Magnesium binding site 2 out of 4 in the Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg1283 b:31.1 occ:1.00 MG L:BCL1283 0.0 31.1 1.0 NB L:BCL1283 1.9 30.5 1.0 NC L:BCL1283 2.0 28.8 1.0 NA L:BCL1283 2.1 27.9 1.0 ND L:BCL1283 2.2 29.7 1.0 NE2 L:HIS153 2.5 34.0 1.0 C4B L:BCL1283 2.9 30.0 1.0 C1B L:BCL1283 3.0 29.9 1.0 C1C L:BCL1283 3.0 28.2 1.0 C4D L:BCL1283 3.1 30.7 1.0 C4C L:BCL1283 3.1 27.3 1.0 C4A L:BCL1283 3.1 29.6 1.0 CD2 L:HIS153 3.2 32.5 1.0 C1D L:BCL1283 3.2 29.9 1.0 C1A L:BCL1283 3.3 29.9 1.0 CHC L:BCL1283 3.3 26.8 1.0 CHB L:BCL1283 3.3 28.6 1.0 CHD L:BCL1283 3.5 26.1 1.0 CHA L:BCL1283 3.5 30.9 1.0 CE1 L:HIS153 3.6 33.1 1.0 CBB L:BPH1284 4.2 26.6 1.0 C3B L:BCL1283 4.2 30.5 1.0 C3D L:BCL1283 4.3 30.7 1.0 C2B L:BCL1283 4.3 29.4 1.0 C2C L:BCL1283 4.3 30.4 1.0 C3C L:BCL1283 4.3 29.0 1.0 C2D L:BCL1283 4.4 27.9 1.0 CG L:HIS153 4.5 32.7 1.0 C3A L:BCL1283 4.5 32.8 1.0 C2A L:BCL1283 4.6 30.6 1.0 CE2 M:TYR210 4.6 26.1 1.0 ND1 L:HIS153 4.6 33.3 1.0 C19 L:BPH1284 4.8 38.9 1.0 CD2 L:LEU154 5.0 36.4 1.0

Magnesium binding site 3 out of 4 in the Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg1302 b:30.3 occ:1.00 MG M:BCL1302 0.0 30.3 1.0 NB M:BCL1302 1.9 29.7 1.0 NC M:BCL1302 2.0 28.6 1.0 NA M:BCL1302 2.1 32.9 1.0 ND M:BCL1302 2.2 30.5 1.0 NE2 M:HIS182 2.4 35.0 1.0 C4B M:BCL1302 2.9 29.9 1.0 C1B M:BCL1302 3.0 29.4 1.0 C1C M:BCL1302 3.0 28.1 1.0 C4D M:BCL1302 3.0 30.9 1.0 C4A M:BCL1302 3.1 34.1 1.0 C4C M:BCL1302 3.1 29.2 1.0 C1D M:BCL1302 3.2 30.3 1.0 CD2 M:HIS182 3.2 33.1 1.0 C1A M:BCL1302 3.3 33.4 1.0 CHC M:BCL1302 3.3 28.9 1.0 CHB M:BCL1302 3.3 32.2 1.0 CE1 M:HIS182 3.5 34.2 1.0 CHD M:BCL1302 3.5 28.6 1.0 CHA M:BCL1302 3.5 33.8 1.0 C3B M:BCL1302 4.2 31.6 1.0 C2B M:BCL1302 4.2 29.3 1.0 C3D M:BCL1302 4.2 30.8 1.0 C2C M:BCL1302 4.4 27.2 1.0 C3C M:BCL1302 4.4 28.4 1.0 C2D M:BCL1302 4.4 30.0 1.0 CG M:HIS182 4.4 35.4 1.0 CBB M:BPH1304 4.5 33.3 1.0 C3A M:BCL1302 4.5 36.8 1.0 ND1 M:HIS182 4.5 35.5 1.0 C2A M:BCL1302 4.5 35.5 1.0 CE2 L:PHE181 4.8 25.6 1.0

Magnesium binding site 4 out of 4 in the Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg1303 b:29.7 occ:1.00 MG M:BCL1303 0.0 29.7 1.0 NB M:BCL1303 1.9 32.0 1.0 NC M:BCL1303 2.0 31.5 1.0 NA M:BCL1303 2.1 31.5 1.0 ND M:BCL1303 2.2 30.1 1.0 NE2 M:HIS202 2.3 24.5 1.0 C4B M:BCL1303 2.9 32.1 1.0 C1C M:BCL1303 3.0 29.5 1.0 C1B M:BCL1303 3.0 33.2 1.0 C4D M:BCL1303 3.0 29.3 1.0 C4C M:BCL1303 3.1 29.2 1.0 C4A M:BCL1303 3.1 31.7 1.0 CE1 M:HIS202 3.1 23.6 1.0 C1D M:BCL1303 3.2 31.3 1.0 C1A M:BCL1303 3.2 29.6 1.0 CHC M:BCL1303 3.3 29.9 1.0 CHB M:BCL1303 3.3 31.3 1.0 CD2 M:HIS202 3.4 25.3 1.0 CBB L:BCL1282 3.4 30.8 1.0 CHA M:BCL1303 3.5 29.9 1.0 CHD M:BCL1303 3.5 30.2 1.0 CAB L:BCL1282 3.8 31.0 1.0 OBB L:BCL1282 3.9 30.9 1.0 C3D M:BCL1303 4.3 29.5 1.0 C3B M:BCL1303 4.3 32.5 1.0 C2B M:BCL1303 4.3 32.8 1.0 ND1 M:HIS202 4.3 25.2 1.0 C2C M:BCL1303 4.3 30.3 1.0 C3C M:BCL1303 4.4 30.3 1.0 C2D M:BCL1303 4.4 30.6 1.0 CG M:HIS202 4.5 25.6 1.0 C3B L:BCL1282 4.5 31.2 1.0 C3A M:BCL1303 4.5 31.6 1.0 C2A M:BCL1303 4.6 29.2 1.0

G.Katona, U.Andreasson, E.M.Landau, L.-E.Andreasson, R.Neutze. Lipidic Cubic Phase Crystal Structure of the Photosynthetic Reaction Centre From Rhodobacter Sphaeroides at 2.35 A Resolution J.Mol.Biol. V. 331 681 2003.
ISSN: ISSN 0022-2836
PubMed: 12899837
DOI: 10.1016/S0022-2836(03)00751-4