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Magnesium in PDB 1oh9: Acetylglutamate Kinase From Escherichia Coli Complexed with Mgadp, N- Acetyl-L-Glutamate and the Transition-State Mimic ALF4-

Enzymatic activity of Acetylglutamate Kinase From Escherichia Coli Complexed with Mgadp, N- Acetyl-L-Glutamate and the Transition-State Mimic ALF4-

All present enzymatic activity of Acetylglutamate Kinase From Escherichia Coli Complexed with Mgadp, N- Acetyl-L-Glutamate and the Transition-State Mimic ALF4-:
2.7.2.8;

Protein crystallography data

The structure of Acetylglutamate Kinase From Escherichia Coli Complexed with Mgadp, N- Acetyl-L-Glutamate and the Transition-State Mimic ALF4-, PDB code: 1oh9 was solved by F.Gil-Ortiz, S.Ramon-Maiques, I.Fita, V.Rubio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.91
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 59.457, 72.220, 107.214, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 22.9

Other elements in 1oh9:

The structure of Acetylglutamate Kinase From Escherichia Coli Complexed with Mgadp, N- Acetyl-L-Glutamate and the Transition-State Mimic ALF4- also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Aluminium (Al) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Acetylglutamate Kinase From Escherichia Coli Complexed with Mgadp, N- Acetyl-L-Glutamate and the Transition-State Mimic ALF4- (pdb code 1oh9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Acetylglutamate Kinase From Escherichia Coli Complexed with Mgadp, N- Acetyl-L-Glutamate and the Transition-State Mimic ALF4-, PDB code: 1oh9:

Magnesium binding site 1 out of 1 in 1oh9

Go back to Magnesium Binding Sites List in 1oh9
Magnesium binding site 1 out of 1 in the Acetylglutamate Kinase From Escherichia Coli Complexed with Mgadp, N- Acetyl-L-Glutamate and the Transition-State Mimic ALF4-


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Acetylglutamate Kinase From Escherichia Coli Complexed with Mgadp, N- Acetyl-L-Glutamate and the Transition-State Mimic ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1262

b:55.3
occ:1.00
 O A:HOH2143 2.0 27.4 1.0
O2A A:ADP1259 2.1 55.5 1.0
O1B A:ADP1259 2.4 52.8 1.0
O A:HOH2210 2.4 19.2 1.0
F2 A:ALF1261 2.5 51.0 1.0
PA A:ADP1259 3.3 54.8 1.0
OD2 A:ASP162 3.3 15.2 1.0
PB A:ADP1259 3.4 53.0 1.0
O3A A:ADP1259 3.5 54.0 1.0
ND2 A:ASN160 3.5 13.7 1.0
O3B A:ADP1259 3.8 53.2 1.0
AL A:ALF1261 4.0 43.0 1.0
NZ A:LYS217 4.0 20.9 1.0
F3 A:ALF1261 4.1 60.6 1.0
O5' A:ADP1259 4.1 51.9 1.0
CG A:ASP162 4.2 13.4 1.0
OE1 A:NLG1260 4.3 14.9 1.0
O1A A:ADP1259 4.4 55.1 1.0
O A:HOH2209 4.4 31.4 1.0
CG A:ASN160 4.5 12.3 1.0
O A:GLY213 4.5 28.4 1.0
O A:HOH2208 4.5 35.6 1.0
NZ A:LYS8 4.6 13.4 1.0
OD1 A:ASN160 4.6 14.1 1.0
F4 A:ALF1261 4.7 58.8 1.0
O2B A:ADP1259 4.7 53.4 1.0
OD1 A:ASP162 4.7 14.1 1.0
CE A:LYS217 4.8 21.9 1.0
CA A:GLY213 4.9 29.9 1.0
C A:GLY213 5.0 28.4 1.0

Reference:

F.Gil-Ortiz, S.Ramon-Maiques, I.Fita, V.Rubio. The Course of Phosphorus in the Reaction of N-Acetyl-L-Glutamate Kinase, Determined From the Structures of Crystalline Complexes, Including A Complex with An Alf(4)(-) Transition State Mimic J.Mol.Biol. V. 331 231 2003.
ISSN: ISSN 0022-2836
PubMed: 12875848
DOI: 10.1016/S0022-2836(03)00716-2
Page generated: Tue Aug 13 10:38:52 2024

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