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Magnesium in PDB 1ohh: Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1

Enzymatic activity of Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1

All present enzymatic activity of Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1:
3.6.1.34;

Protein crystallography data

The structure of Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1, PDB code: 1ohh was solved by E.Cabezon, M.G.Montgomery, A.G.W.Leslie, J.E.Walker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.5 / 2.8
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 272.300, 107.200, 152.400, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 28

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1 (pdb code 1ohh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1, PDB code: 1ohh:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 1ohh

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Magnesium binding site 1 out of 5 in the Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1512

b:39.8
occ:0.50
 O2B A:ANP1511 2.1 39.5 0.5
O2G A:ANP1511 2.1 48.1 0.5
OG1 A:THR176 2.1 67.8 0.5
PG A:ANP1511 3.3 53.8 0.5
CB A:THR176 3.3 60.1 0.5
PB A:ANP1511 3.4 45.6 0.5
N3B A:ANP1511 3.7 47.7 0.5
O3G A:ANP1511 3.8 47.4 0.5
OD2 A:ASP269 4.1 70.6 0.5
OD1 A:ASP269 4.1 70.0 0.5
O1B A:ANP1511 4.2 52.1 0.5
N A:THR176 4.2 56.2 0.5
CG2 A:THR176 4.2 61.6 0.5
CA A:THR176 4.3 57.9 0.5
O2A A:ANP1511 4.5 43.3 0.5
O3A A:ANP1511 4.5 48.1 0.5
CG A:ASP269 4.5 67.0 0.5
O1G A:ANP1511 4.5 52.1 0.5
PA A:ANP1511 4.9 49.0 0.5

Magnesium binding site 2 out of 5 in 1ohh

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Magnesium binding site 2 out of 5 in the Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1512

b:58.0
occ:0.50
 O2G B:ANP1511 2.1 55.0 0.5
O2B B:ANP1511 2.2 53.6 0.5
OG1 B:THR176 2.4 42.3 0.5
PG B:ANP1511 3.2 51.9 0.5
PB B:ANP1511 3.4 55.2 0.5
CB B:THR176 3.5 44.4 0.5
OD2 B:ASP269 3.6 48.8 0.5
N3B B:ANP1511 3.6 42.0 0.5
O1G B:ANP1511 3.7 47.1 0.5
N B:THR176 3.8 44.4 0.5
OD1 B:ASP269 4.0 54.5 0.5
CA B:THR176 4.1 43.0 0.5
O1B B:ANP1511 4.2 63.1 0.5
CG B:ASP269 4.2 43.8 0.5
CB B:LYS175 4.3 41.4 0.5
NZ B:LYS175 4.4 46.3 0.5
O2A B:ANP1511 4.4 54.5 0.5
CE B:LYS175 4.5 38.1 0.5
O3G B:ANP1511 4.5 55.3 0.5
O3A B:ANP1511 4.6 53.0 0.5
CG2 B:THR176 4.7 40.8 0.5
C B:LYS175 4.9 43.9 0.5
OE1 B:GLN208 4.9 59.0 0.5

Magnesium binding site 3 out of 5 in 1ohh

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Magnesium binding site 3 out of 5 in the Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1512

b:47.0
occ:0.50
 OG1 C:THR176 2.0 33.5 0.5
O2G C:ANP1511 2.1 44.3 0.5
O2B C:ANP1511 2.1 49.8 0.5
CB C:THR176 3.2 38.5 0.5
PG C:ANP1511 3.3 43.3 0.5
PB C:ANP1511 3.4 48.8 0.5
N3B C:ANP1511 3.7 32.7 0.5
OD1 C:ASP269 3.8 48.1 0.5
N C:THR176 3.9 40.2 0.5
O1B C:ANP1511 4.1 40.6 0.5
O3G C:ANP1511 4.1 42.1 0.5
CA C:THR176 4.1 39.7 0.5
CG2 C:THR176 4.3 38.5 0.5
O1G C:ANP1511 4.4 43.6 0.5
OD2 C:ASP269 4.4 45.2 0.5
O2A C:ANP1511 4.4 37.1 0.5
CG C:ASP269 4.5 47.7 0.5
O3A C:ANP1511 4.6 34.0 0.5
CB C:LYS175 4.7 35.3 0.5
OE1 C:GLN208 5.0 72.0 0.5

Magnesium binding site 4 out of 5 in 1ohh

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Magnesium binding site 4 out of 5 in the Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1479

b:60.0
occ:0.50
 OG1 D:THR163 2.0 45.8 0.5
O2G D:ANP1478 2.1 61.6 0.5
O2B D:ANP1478 2.2 58.6 0.5
OE1 D:GLU188 3.1 78.5 0.5
PG D:ANP1478 3.2 62.7 0.5
CB D:THR163 3.3 47.2 0.5
PB D:ANP1478 3.4 51.5 0.5
OE2 D:GLU192 3.6 67.6 0.5
N3B D:ANP1478 3.6 61.0 0.5
O3G D:ANP1478 3.9 56.1 0.5
OE1 D:GLU192 3.9 71.5 0.5
NH1 D:ARG189 3.9 52.9 0.5
CD D:GLU188 4.2 76.2 0.5
O2A D:ANP1478 4.2 42.5 0.5
CD D:GLU192 4.2 66.3 0.5
N D:THR163 4.2 51.2 0.5
OD1 D:ASP256 4.2 50.8 0.5
CA D:THR163 4.3 49.2 0.5
CG2 D:THR163 4.3 47.7 0.5
O1B D:ANP1478 4.4 62.4 0.5
O1G D:ANP1478 4.4 62.6 0.5
O3A D:ANP1478 4.5 46.4 0.5
OD2 D:ASP256 4.5 52.1 0.5
NH1 C:ARG373 4.6 65.1 0.5
CG D:ASP256 4.8 52.2 0.5
PA D:ANP1478 4.9 45.6 0.5
OE2 D:GLU188 4.9 82.5 0.5
CE D:LYS162 5.0 44.4 0.5

Magnesium binding site 5 out of 5 in 1ohh

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Magnesium binding site 5 out of 5 in the Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bovine Mitochondrial F1-Atpase Complexed with the Inhibitor Protein IF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1479

b:44.8
occ:0.50
 O2G F:ANP1478 2.1 50.7 0.5
OG1 F:THR163 2.2 41.9 0.5
O2B F:ANP1478 2.2 51.8 0.5
OE1 F:GLU188 2.8 53.0 0.5
PG F:ANP1478 3.4 45.8 0.5
PB F:ANP1478 3.4 46.1 0.5
CB F:THR163 3.5 38.4 0.5
CD F:GLU188 3.6 53.6 0.5
N3B F:ANP1478 3.7 50.7 0.5
OD1 F:ASP256 3.8 43.3 0.5
N F:THR163 4.1 37.8 0.5
O1B F:ANP1478 4.1 57.8 0.5
O1G F:ANP1478 4.1 50.7 0.5
NH1 F:ARG189 4.2 36.2 0.5
CA F:THR163 4.2 37.5 0.5
OD2 F:ASP256 4.3 47.6 0.5
OE2 F:GLU188 4.3 61.0 0.5
OE2 F:GLU192 4.4 43.0 0.5
CE F:LYS162 4.4 33.0 0.5
CG F:GLU188 4.4 34.8 0.5
CG F:ASP256 4.4 39.2 0.5
CG2 F:THR163 4.5 41.5 0.5
OE1 F:GLU192 4.5 38.7 0.5
O3G F:ANP1478 4.5 49.7 0.5
O2A F:ANP1478 4.6 54.2 0.5
O3A F:ANP1478 4.6 41.7 0.5
CB F:LYS162 4.7 25.2 0.5
ND2 F:ASN257 4.7 41.2 0.5
NZ F:LYS162 4.8 26.2 0.5
CD F:GLU192 4.9 41.3 0.5

Reference:

E.Cabezon, M.G.Montgomery, A.G.W.Leslie, J.E.Walker. The Structure of Bovine F1-Atpase in Complex with Its Regulatory Protein IF1 Nat.Struct.Biol. V. 10 744 2003.
ISSN: ISSN 1545-9993
PubMed: 12923572
DOI: 10.1038/NSB966
Page generated: Mon Dec 14 06:35:03 2020

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