Atomistry » Magnesium » PDB 1ofh-1oyj » 1ox0
Atomistry »
  Magnesium »
    PDB 1ofh-1oyj »
      1ox0 »

Magnesium in PDB 1ox0: The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae

Enzymatic activity of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae

All present enzymatic activity of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae:
2.3.1.41;

Protein crystallography data

The structure of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, PDB code: 1ox0 was solved by A.C.Price, C.O.Rock, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.30
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 63.666, 89.973, 62.202, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 16

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae (pdb code 1ox0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae, PDB code: 1ox0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1ox0

Go back to Magnesium Binding Sites List in 1ox0
Magnesium binding site 1 out of 2 in the The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:8.4
occ:1.00
OE1 A:GLU346 2.5 10.8 1.0
OD1 A:ASN301 2.6 9.1 1.0
O A:ASN392 2.6 8.7 1.0
OG A:SER391 2.7 9.5 1.0
O A:ASN301 2.8 8.6 1.0
O A:ALA302 2.8 9.9 1.0
C A:ALA302 3.4 9.0 1.0
CD A:GLU346 3.5 8.5 1.0
N A:ASN392 3.5 8.0 1.0
C A:ASN301 3.5 8.0 1.0
CG A:ASN301 3.6 8.2 1.0
C A:ASN392 3.6 7.9 1.0
CB A:GLU346 3.7 7.9 1.0
CB A:SER391 4.0 8.8 1.0
N A:HIS303 4.0 8.8 1.0
CG A:GLU346 4.0 9.0 1.0
CB A:ASN301 4.0 8.7 1.0
O A:HOH505 4.0 9.3 1.0
C A:SER391 4.0 7.8 1.0
CA A:ASN392 4.1 8.4 1.0
CA A:SER391 4.1 8.7 1.0
N A:ALA302 4.1 8.2 1.0
CA A:ALA302 4.3 9.0 1.0
CA A:HIS303 4.3 8.8 1.0
CA A:ASN301 4.4 8.3 1.0
OE2 A:GLU346 4.5 9.0 1.0
CG2 A:THR393 4.6 9.7 1.0
O A:HOH520 4.7 10.8 1.0
CB A:ASN392 4.7 8.4 1.0
N A:THR393 4.8 7.8 1.0
ND2 A:ASN301 4.8 9.0 1.0
NZ A:LYS332 4.8 8.8 1.0
O A:SER391 4.9 8.7 1.0

Magnesium binding site 2 out of 2 in 1ox0

Go back to Magnesium Binding Sites List in 1ox0
Magnesium binding site 2 out of 2 in the The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase II From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:16.8
occ:1.00
O A:HOH779 2.0 19.9 1.0
O A:HOH644 2.0 20.2 1.0
O A:HOH566 2.1 14.0 1.0
O A:HOH583 2.1 18.6 1.0
O A:HOH796 2.1 22.0 1.0
O A:HOH767 2.1 15.3 1.0
OD2 A:ASP56 3.8 16.2 1.0
O A:HOH676 4.3 24.5 1.0
OE1 A:GLU23 4.4 14.0 1.0
O A:HOH680 4.4 23.8 1.0
O A:HOH511 4.4 11.8 1.0
O A:HOH636 4.5 22.7 1.0
O A:ILE17 4.5 10.1 1.0
CA A:GLY18 4.6 8.8 1.0
O A:HOH801 4.6 23.7 1.0
C A:ILE17 4.7 8.5 1.0
N A:GLY18 4.8 8.3 1.0
CD A:GLU23 4.8 18.3 1.0
CG A:ASP56 4.8 13.3 1.0
O A:HOH688 5.0 24.1 1.0

Reference:

A.C.Price, C.O.Rock, S.W.White. The 1.3-Angstrom-Resolution Crystal Structure of Beta-Ketoacyl-Acyl Carrier Protein Synthase II From Streptococcus Pneumoniae. J.Bacteriol. V. 185 4136 2003.
ISSN: ISSN 0021-9193
PubMed: 12837788
DOI: 10.1128/JB.185.14.4136-4143.2003
Page generated: Mon Dec 14 06:35:21 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy