Magnesium in PDB 1oxv: Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus

The structure of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus, PDB code: 1oxv was solved by G.Verdon, S.V.Albers, B.W.Dijkstra, A.J.Driessen, A.M.Thunnissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.094, 148.776, 176.710, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 24

The structure of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus also contains other interesting chemical elements:

Iodine

(I)

38 atoms

The binding sites of Magnesium atom in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus (pdb code 1oxv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus, PDB code: 1oxv:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1102 b:25.8 occ:1.00 O A:HOH1334 2.0 22.5 1.0 O3G A:ANP1104 2.1 21.9 1.0 O2B A:ANP1104 2.1 19.8 1.0 O A:HOH1343 2.1 29.7 1.0 OG1 A:THR45 2.2 19.6 1.0 O A:HOH1323 2.3 25.9 1.0 CB A:THR45 3.2 14.1 1.0 PG A:ANP1104 3.2 31.0 1.0 PB A:ANP1104 3.3 24.1 1.0 N3B A:ANP1104 3.5 27.2 1.0 OE1 A:GLN89 3.7 36.1 1.0 O1G A:ANP1104 3.9 27.2 1.0 N A:THR45 3.9 14.5 1.0 OD2 A:ASP165 4.0 17.2 1.0 O2A A:ANP1104 4.1 22.8 1.0 OE2 A:GLU166 4.1 28.0 1.0 CA A:THR45 4.1 12.3 1.0 CG2 A:THR45 4.2 24.1 1.0 O A:HOH1380 4.2 38.5 1.0 O1B A:ANP1104 4.3 22.0 1.0 OD1 A:ASP165 4.3 22.7 1.0 O A:HOH1405 4.3 43.2 1.0 O2G A:ANP1104 4.3 32.7 1.0 O3A A:ANP1104 4.4 21.3 1.0 CD A:GLN89 4.5 27.2 1.0 CG A:ASP165 4.6 28.1 1.0 PA A:ANP1104 4.7 24.0 1.0 CG A:GLN89 4.8 43.4 1.0 CB A:LYS44 4.9 16.8 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1103 b:33.4 occ:1.00 O B:HOH1280 2.0 31.7 1.0 O2B B:ANP1105 2.1 25.2 1.0 O3G B:ANP1105 2.1 31.0 1.0 O B:HOH1291 2.2 27.4 1.0 O B:HOH1375 2.2 33.0 1.0 OG1 B:THR45 2.2 16.2 1.0 CB B:THR45 3.2 19.5 1.0 PG B:ANP1105 3.2 39.1 1.0 PB B:ANP1105 3.3 30.2 1.0 N3B B:ANP1105 3.5 34.6 1.0 OE1 B:GLN89 3.8 29.0 0.5 N B:THR45 3.9 16.2 1.0 O1G B:ANP1105 4.0 35.4 1.0 O2A B:ANP1105 4.1 27.4 1.0 CA B:THR45 4.1 13.0 1.0 NE2 B:GLN89 4.2 34.8 0.5 OD2 B:ASP165 4.2 16.3 1.0 CG2 B:THR45 4.2 16.8 1.0 OE1 B:GLU166 4.2 31.8 1.0 O1B B:ANP1105 4.2 24.5 1.0 O3A B:ANP1105 4.3 32.6 1.0 OD1 B:ASP165 4.3 24.8 1.0 O2G B:ANP1105 4.4 48.4 1.0 PA B:ANP1105 4.7 32.5 1.0 CG B:ASP165 4.8 32.8 1.0 CB B:LYS44 4.8 14.9 1.0 CE B:LYS44 4.9 18.1 1.0 CD B:GLN89 4.9 32.2 0.5

Magnesium binding site 3 out of 3 in the Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Glcv, the Abc-Atpase of the Glucose Abc Transporter From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1101 b:25.4 occ:1.00 O3G D:ANP1106 2.0 28.2 1.0 OE1 D:GLN89 2.1 2.8 1.0 O D:HOH1341 2.1 21.6 1.0 O2B D:ANP1106 2.1 20.4 1.0 O D:HOH1350 2.2 22.8 1.0 OG1 D:THR45 2.2 20.4 1.0 CD D:GLN89 3.0 46.8 1.0 PG D:ANP1106 3.2 30.5 1.0 CB D:THR45 3.2 14.3 1.0 PB D:ANP1106 3.3 21.9 1.0 N3B D:ANP1106 3.6 24.1 1.0 NE2 D:GLN89 3.6 30.8 1.0 O1G D:ANP1106 3.9 26.9 1.0 N D:THR45 4.0 14.5 1.0 OE2 D:GLU166 4.1 22.2 1.0 O2A D:ANP1106 4.1 21.1 1.0 OD2 D:ASP165 4.1 18.2 1.0 CG D:GLN89 4.1 33.1 1.0 O D:HOH1459 4.2 42.4 1.0 CA D:THR45 4.2 9.6 1.0 CG2 D:THR45 4.2 18.5 1.0 OD1 D:ASP165 4.3 23.3 1.0 O D:HOH1421 4.3 38.2 1.0 O1B D:ANP1106 4.3 22.1 1.0 O3A D:ANP1106 4.4 20.9 1.0 O2G D:ANP1106 4.4 30.6 1.0 CG D:ASP165 4.7 31.3 1.0 PA D:ANP1106 4.7 23.6 1.0 O D:HOH1426 4.9 47.0 1.0 CB D:LYS44 5.0 20.2 1.0

G.Verdon, S.V.Albers, B.W.Dijkstra, A.J.Driessen, A.M.Thunnissen. Crystal Structures of the Atpase Subunit of the Glucose Abc Transporter From Sulfolobus Solfataricus: Nucleotide-Free and Nucleotide-Bound Conformations J.Mol.Biol. V. 330 343 2003.
ISSN: ISSN 0022-2836
PubMed: 12823973
DOI: 10.1016/S0022-2836(03)00575-8