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Magnesium in PDB 1p2v: H-Ras 166 in 60 % 1,6 Hexanediol

Protein crystallography data

The structure of H-Ras 166 in 60 % 1,6 Hexanediol, PDB code: 1p2v was solved by G.K.Buhrman, V.De Serrano, C.Mattos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.58 / 2.30
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 40.360, 40.360, 161.640, 90.00, 90.00, 120.00
R / Rfree (%) 21 / 25.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the H-Ras 166 in 60 % 1,6 Hexanediol (pdb code 1p2v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the H-Ras 166 in 60 % 1,6 Hexanediol, PDB code: 1p2v:

Magnesium binding site 1 out of 1 in 1p2v

Go back to Magnesium Binding Sites List in 1p2v
Magnesium binding site 1 out of 1 in the H-Ras 166 in 60 % 1,6 Hexanediol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of H-Ras 166 in 60 % 1,6 Hexanediol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg168

b:20.6
occ:1.00
OG A:SER17 2.2 14.7 1.0
O A:HOH1874 2.3 15.7 1.0
O2B A:GNP167 2.3 16.1 1.0
OG1 A:THR35 2.4 22.6 1.0
O2G A:GNP167 2.4 15.3 1.0
O A:HOH1873 2.4 19.9 1.0
CB A:THR35 3.1 21.1 1.0
CB A:SER17 3.2 14.9 1.0
PB A:GNP167 3.3 15.0 1.0
PG A:GNP167 3.4 15.6 1.0
N3B A:GNP167 3.5 14.2 1.0
N A:SER17 3.8 15.5 1.0
OD2 A:ASP57 3.9 18.7 1.0
N A:THR35 4.0 23.1 1.0
CA A:SER17 4.0 15.1 1.0
CA A:THR35 4.1 22.9 1.0
O2A A:GNP167 4.2 14.4 1.0
CG2 A:THR35 4.2 18.1 1.0
OD1 A:ASP57 4.2 18.7 1.0
O3G A:GNP167 4.3 15.8 1.0
O3A A:GNP167 4.3 14.2 1.0
O A:ASP33 4.4 20.6 1.0
O1G A:GNP167 4.4 13.8 1.0
O A:HOH1882 4.4 24.8 1.0
CG A:ASP57 4.4 19.0 1.0
PA A:GNP167 4.5 14.9 1.0
O1B A:GNP167 4.5 15.6 1.0
O A:THR58 4.5 19.3 1.0
O1A A:GNP167 4.5 14.4 1.0
CB A:LYS16 4.9 11.2 1.0
C A:LYS16 4.9 15.4 1.0
C A:PRO34 4.9 23.1 1.0

Reference:

G.K.Buhrman, V.De Serrano, C.Mattos. Organic Solvents Order the Dynamic Switch II in Ras Crystals Structure V. 11 747 2003.
ISSN: ISSN 0969-2126
PubMed: 12842038
DOI: 10.1016/S0969-2126(03)00128-X
Page generated: Mon Dec 14 06:35:36 2020

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