Magnesium in PDB 1p5w: The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants

The structure of The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants, PDB code: 1p5w was solved by M.Agbandje-Mckenna, L.Govindasamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 3.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	372.417, 373.017, 377.083, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 20.2

The binding sites of Magnesium atom in the The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants (pdb code 1p5w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants, PDB code: 1p5w:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:9.8 occ:1.00 OD1 A:ASN180 2.2 27.8 1.0 OP2 B:DT9 2.5 65.7 1.0 OP1 B:DC4 2.6 40.2 1.0 OP2 B:DC7 2.6 26.5 1.0 OP1 B:DT6 2.9 36.3 1.0 CG A:ASN180 3.4 29.2 1.0 P B:DC4 3.5 38.2 1.0 OP2 B:DC4 3.5 40.6 1.0 P B:DT9 3.7 64.5 1.0 O5' B:DT6 3.8 29.3 1.0 ND2 A:ASN180 3.9 31.0 1.0 O5' B:DT9 4.0 66.9 1.0 P B:DT6 4.0 29.2 1.0 P B:DC7 4.1 26.2 1.0 O B:HOH36 4.2 38.7 1.0 C2' B:DT8 4.2 61.9 1.0 O3' B:DA3 4.4 37.4 1.0 C3' B:DT8 4.6 62.2 1.0 O3' B:DT8 4.6 65.6 1.0 CB A:ASN180 4.6 26.0 1.0 OP1 B:DC7 4.7 29.1 1.0 C3' B:DT6 4.7 32.5 1.0 OP1 B:DT9 4.8 67.1 1.0 O5' B:DC4 4.8 44.4 1.0 O5' B:DC7 4.8 30.1 1.0 O3' B:DC5 4.9 42.0 1.0 O2 B:DC7 4.9 45.0 1.0 C3' B:DA3 4.9 32.4 1.0

Magnesium binding site 2 out of 4 in the The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg102 b:11.7 occ:1.00 OP1 B:DT9 2.6 67.1 1.0 OP1 B:DA3 2.7 30.8 1.0 P B:DT9 3.6 64.5 1.0 OP2 B:DT9 3.7 65.7 1.0 P B:DA3 3.9 25.2 1.0 OG A:SER179 3.9 24.5 1.0 O3' B:DT8 3.9 65.6 1.0 O5' B:DA3 4.2 29.9 1.0 ND2 A:ASN180 4.3 31.0 1.0 OP1 B:DC7 4.4 29.1 1.0 OP1 B:DT2 4.5 75.6 1.0 C3' B:DT8 4.7 62.2 1.0 OP2 B:DA3 4.8 26.2 1.0 OP2 B:DT2 4.9 75.6 1.0 CB A:SER179 5.0 23.3 1.0

Magnesium binding site 3 out of 4 in the The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg585 b:9.8 occ:1.00 OD2 A:ASP240 2.4 25.8 1.0 OD2 A:ASP237 2.7 36.2 1.0 CG A:ASP240 3.5 24.5 1.0 CG A:ASP237 3.7 33.6 1.0 OD1 A:ASP240 3.9 26.5 1.0 CB A:ASP237 3.9 30.0 1.0 OD1 A:ASP215 4.8 40.3 1.0 OG1 A:THR349 4.8 38.9 1.0 CB A:ASP240 4.8 20.3 1.0 OD1 A:ASP237 4.8 33.6 1.0 MG A:MG586 4.9 9.8 1.0

Magnesium binding site 4 out of 4 in the The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structures of Host Range Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg586 b:9.8 occ:1.00 OD2 A:ASP239 2.5 38.7 1.0 OD1 A:ASP237 2.7 33.6 1.0 OD2 A:ASP237 2.7 36.2 1.0 CG A:ASP237 3.0 33.6 1.0 CG A:ASP239 3.6 35.6 1.0 O A:HOH649 3.8 39.8 1.0 CB A:ASP239 4.1 29.5 1.0 O A:HOH652 4.2 20.3 1.0 CB A:ASP237 4.5 30.0 1.0 OD1 A:ASP239 4.7 36.4 1.0 MG A:MG585 4.9 9.8 1.0

L.Govindasamy, K.Hueffer, C.R.Parrish, M.Agbandje-Mckenna. Structures of Host Range-Controlling Regions of the Capsids of Canine and Feline Parvoviruses and Mutants. J.Virol. V. 77 12211 2003.
ISSN: ISSN 0022-538X
PubMed: 14581558
DOI: 10.1128/JVI.77.22.12211-12221.2003