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Magnesium in PDB 1p7l: S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
Enzymatic activity of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
All present enzymatic activity of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.:
2.5.1.6;
2.5.1.6;
Protein crystallography data
The structure of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met., PDB code: 1p7l
was solved by
F.Takusagawa,
J.Komoto,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 10.00 / 2.50 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 225.820, 69.130, 118.230, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 21.3 / 24.2 |
Other elements in 1p7l:
The structure of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met. also contains other interesting chemical elements:
| Potassium | (K) | 4 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
(pdb code 1p7l). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met., PDB code: 1p7l:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Magnesium where determined in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met., PDB code: 1p7l:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Magnesium binding site 1 out of 8 in 1p7l
Go back to
Magnesium Binding Sites List in 1p7l
Magnesium binding site 1 out
of 8 in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met. within 5.0Å range:
|
Magnesium binding site 2 out of 8 in 1p7l
Go back to
Magnesium Binding Sites List in 1p7l
Magnesium binding site 2 out
of 8 in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met. within 5.0Å range:
|
Magnesium binding site 3 out of 8 in 1p7l
Go back to
Magnesium Binding Sites List in 1p7l
Magnesium binding site 3 out
of 8 in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met. within 5.0Å range:
|
Magnesium binding site 4 out of 8 in 1p7l
Go back to
Magnesium Binding Sites List in 1p7l
Magnesium binding site 4 out
of 8 in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met. within 5.0Å range:
|
Magnesium binding site 5 out of 8 in 1p7l
Go back to
Magnesium Binding Sites List in 1p7l
Magnesium binding site 5 out
of 8 in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met. within 5.0Å range:
|
Magnesium binding site 6 out of 8 in 1p7l
Go back to
Magnesium Binding Sites List in 1p7l
Magnesium binding site 6 out
of 8 in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met. within 5.0Å range:
|
Magnesium binding site 7 out of 8 in 1p7l
Go back to
Magnesium Binding Sites List in 1p7l
Magnesium binding site 7 out
of 8 in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met. within 5.0Å range:
|
Magnesium binding site 8 out of 8 in 1p7l
Go back to
Magnesium Binding Sites List in 1p7l
Magnesium binding site 8 out
of 8 in the S-Adenosylmethionine Synthetase Complexed with Amppnp and Met.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of S-Adenosylmethionine Synthetase Complexed with Amppnp and Met. within 5.0Å range:
|
Reference:
J.Komoto,
T.Yamada,
Y.Takata,
G.D.Markham,
F.Takusagawa.
Crystal Structure of the S-Adenosylmethionine Synthetase Ternary Complex: A Novel Catalytic Mechanism of S-Adenosylmethionine Synthesis From Atp and Met. Biochemistry V. 43 1821 2004.
ISSN: ISSN 0006-2960
PubMed: 14967023
DOI: 10.1021/BI035611T
Page generated: Tue Aug 13 10:49:34 2024
ISSN: ISSN 0006-2960
PubMed: 14967023
DOI: 10.1021/BI035611T
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