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Magnesium in PDB 1pbj: Cbs Domain Protein

Protein crystallography data

The structure of Cbs Domain Protein, PDB code: 1pbj was solved by M.E.Cuff, T.Skarina, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.93 / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 58.788, 48.586, 56.481, 90.00, 107.78, 90.00
R / Rfree (%) 19.2 / 20.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cbs Domain Protein (pdb code 1pbj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cbs Domain Protein, PDB code: 1pbj:

Magnesium binding site 1 out of 1 in 1pbj

Go back to Magnesium Binding Sites List in 1pbj
Magnesium binding site 1 out of 1 in the Cbs Domain Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cbs Domain Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:13.4
occ:1.00
O A:HOH509 2.0 14.2 1.0
O A:HOH707 2.1 14.6 1.0
OE2 A:GLU72 2.1 13.9 1.0
O A:HOH517 2.1 16.4 1.0
O A:HOH510 2.1 12.4 1.0
O A:HOH516 2.1 14.4 1.0
CD A:GLU72 3.1 12.6 1.0
OE1 A:GLU72 3.4 14.5 1.0
O A:HOH504 3.4 9.6 1.0
OE1 A:GLU54 4.1 15.7 1.0
OD1 A:ASP51 4.1 11.4 1.0
O A:HOH569 4.1 25.1 1.0
OE2 A:GLU54 4.2 13.8 1.0
O A:HOH615 4.3 28.0 1.0
O A:HOH506 4.3 11.2 1.0
O A:HOH671 4.4 54.1 1.0
CG A:GLU72 4.4 11.3 1.0
CD A:GLU54 4.5 13.0 1.0
CD1 A:TRP50 4.6 10.2 1.0
O A:HOH505 4.8 10.8 1.0
O A:HOH523 4.8 26.7 1.0
O A:HOH525 5.0 19.2 1.0

Reference:

M.E.Cuff, T.Skarina, A.Savchenko, A.Edwards, A.Joachimiak. Structure of A Hypothetical Protein From M. Thermautotrophicus Reveals A Novel Fold and A Pseudo 2-Fold Axis of Symmetry To Be Published.
Page generated: Tue Aug 13 10:50:25 2024

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