Atomistry » Magnesium » PDB 1ozf-1php » 1pcq
Atomistry »
  Magnesium »
    PDB 1ozf-1php »
      1pcq »

Magnesium in PDB 1pcq: Crystal Structure of Groel-Groes

Protein crystallography data

The structure of Crystal Structure of Groel-Groes, PDB code: 1pcq was solved by C.Chaudhry, G.W.Farr, M.J.Todd, H.S.Rye, A.T.Brunger, P.D.Adams, A.L.Horwich, P.B.Sigler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.39 / 2.81
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 255.546, 266.855, 187.049, 90.00, 90.00, 90.00
R / Rfree (%) 26.2 / 27.8

Other elements in 1pcq:

The structure of Crystal Structure of Groel-Groes also contains other interesting chemical elements:

Fluorine (F) 21 atoms
Aluminium (Al) 7 atoms
Potassium (K) 7 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Groel-Groes (pdb code 1pcq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Crystal Structure of Groel-Groes, PDB code: 1pcq:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 1pcq

Go back to Magnesium Binding Sites List in 1pcq
Magnesium binding site 1 out of 7 in the Crystal Structure of Groel-Groes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Groel-Groes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:2.1
occ:1.00
F1 A:AF3602 1.8 7.3 1.0
O2A A:ADP600 1.8 2.2 1.0
O1B A:ADP600 1.8 2.0 1.0
OD1 A:ASP87 2.5 2.4 1.0
PA A:ADP600 2.9 2.9 1.0
PB A:ADP600 3.0 2.6 1.0
O5' A:ADP600 3.1 3.4 1.0
OD2 A:ASP87 3.2 2.6 1.0
CG A:ASP87 3.3 2.8 1.0
O3A A:ADP600 3.4 3.8 1.0
AL A:AF3602 3.5 12.2 1.0
O3B A:ADP600 3.8 2.9 1.0
O1A A:ADP600 4.2 2.0 1.0
O2B A:ADP600 4.3 2.0 1.0
O A:SER151 4.4 2.4 1.0
C5' A:ADP600 4.5 4.4 1.0
N A:GLY88 4.5 2.0 1.0
F2 A:AF3602 4.7 8.7 1.0
CB A:ASP87 4.8 2.8 1.0
F3 A:AF3602 4.8 5.5 1.0
CA A:SER151 4.8 2.0 1.0
OD2 A:ASP398 4.9 9.2 1.0
C3' A:ADP600 5.0 6.1 1.0

Magnesium binding site 2 out of 7 in 1pcq

Go back to Magnesium Binding Sites List in 1pcq
Magnesium binding site 2 out of 7 in the Crystal Structure of Groel-Groes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Groel-Groes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg701

b:2.0
occ:1.00
F1 B:AF3702 1.8 7.5 1.0
O2A B:ADP700 1.8 2.2 1.0
O1B B:ADP700 2.1 2.0 1.0
OD1 B:ASP87 2.4 2.4 1.0
PA B:ADP700 3.0 2.7 1.0
OD2 B:ASP87 3.1 2.9 1.0
CG B:ASP87 3.2 3.0 1.0
PB B:ADP700 3.3 2.5 1.0
O5' B:ADP700 3.3 3.5 1.0
O3A B:ADP700 3.6 3.5 1.0
AL B:AF3702 3.6 12.2 1.0
O3B B:ADP700 4.0 2.7 1.0
O B:SER151 4.2 2.4 1.0
O1A B:ADP700 4.3 2.0 1.0
OD2 B:ASP398 4.5 9.0 1.0
O2B B:ADP700 4.5 2.0 1.0
N B:GLY88 4.6 2.0 1.0
CA B:SER151 4.7 2.1 1.0
CB B:ASP87 4.7 2.6 1.0
C5' B:ADP700 4.7 4.4 1.0
F2 B:AF3702 4.7 8.5 1.0
C B:SER151 4.9 2.0 1.0
F3 B:AF3702 4.9 5.3 1.0
OG B:SER151 4.9 3.0 1.0

Magnesium binding site 3 out of 7 in 1pcq

Go back to Magnesium Binding Sites List in 1pcq
Magnesium binding site 3 out of 7 in the Crystal Structure of Groel-Groes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Groel-Groes within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg801

b:2.0
occ:1.00
O2A C:ADP800 1.7 2.0 1.0
F1 C:AF3802 1.8 7.3 1.0
O1B C:ADP800 2.1 2.1 1.0
OD1 C:ASP87 2.5 2.5 1.0
PA C:ADP800 2.9 2.5 1.0
OD2 C:ASP87 3.2 2.6 1.0
O5' C:ADP800 3.2 3.4 1.0
PB C:ADP800 3.3 2.1 1.0
CG C:ASP87 3.3 3.1 1.0
O3A C:ADP800 3.5 3.7 1.0
AL C:AF3802 3.6 12.4 1.0
O3B C:ADP800 4.0 2.7 1.0
O C:SER151 4.2 2.1 1.0
O1A C:ADP800 4.3 2.0 1.0
O2B C:ADP800 4.5 2.0 1.0
OD2 C:ASP398 4.5 9.4 1.0
C5' C:ADP800 4.6 4.2 1.0
CA C:SER151 4.7 2.0 1.0
N C:GLY88 4.7 2.0 1.0
F2 C:AF3802 4.7 8.8 1.0
CB C:ASP87 4.8 2.8 1.0
F3 C:AF3802 4.9 5.2 1.0
C C:SER151 4.9 2.0 1.0

Magnesium binding site 4 out of 7 in 1pcq

Go back to Magnesium Binding Sites List in 1pcq
Magnesium binding site 4 out of 7 in the Crystal Structure of Groel-Groes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Groel-Groes within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg901

b:2.0
occ:1.00
O2A D:ADP900 1.8 2.0 1.0
F1 D:AF3902 1.8 7.7 1.0
O1B D:ADP900 1.9 2.0 1.0
OD1 D:ASP87 2.5 2.3 1.0
PA D:ADP900 2.9 2.3 1.0
PB D:ADP900 3.1 2.0 1.0
OD2 D:ASP87 3.1 2.6 1.0
O5' D:ADP900 3.1 3.7 1.0
CG D:ASP87 3.2 3.0 1.0
O3A D:ADP900 3.4 3.4 1.0
AL D:AF3902 3.6 12.3 1.0
O3B D:ADP900 3.8 2.6 1.0
O1A D:ADP900 4.2 2.0 1.0
O2B D:ADP900 4.3 2.0 1.0
O D:SER151 4.4 2.5 1.0
C5' D:ADP900 4.6 4.3 1.0
N D:GLY88 4.6 2.0 1.0
CB D:ASP87 4.8 2.8 1.0
F2 D:AF3902 4.8 8.9 1.0
CA D:SER151 4.8 2.0 1.0
OD2 D:ASP398 4.9 9.0 1.0
F3 D:AF3902 4.9 5.6 1.0
C3' D:ADP900 4.9 6.0 1.0

Magnesium binding site 5 out of 7 in 1pcq

Go back to Magnesium Binding Sites List in 1pcq
Magnesium binding site 5 out of 7 in the Crystal Structure of Groel-Groes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Groel-Groes within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1001

b:2.0
occ:1.00
O2A E:ADP1000 1.8 2.3 1.0
F1 E:AF31002 1.9 7.5 1.0
O1B E:ADP1000 2.0 2.0 1.0
OD1 E:ASP87 2.5 2.4 1.0
PA E:ADP1000 3.0 2.8 1.0
OD2 E:ASP87 3.1 2.8 1.0
CG E:ASP87 3.2 3.0 1.0
PB E:ADP1000 3.2 2.1 1.0
O5' E:ADP1000 3.3 3.5 1.0
O3A E:ADP1000 3.5 3.4 1.0
AL E:AF31002 3.6 12.1 1.0
O3B E:ADP1000 3.9 2.8 1.0
O E:SER151 4.2 2.4 1.0
O1A E:ADP1000 4.3 2.0 1.0
O2B E:ADP1000 4.5 2.0 1.0
N E:GLY88 4.6 2.0 1.0
OD2 E:ASP398 4.6 9.1 1.0
C5' E:ADP1000 4.7 4.4 1.0
CA E:SER151 4.7 2.0 1.0
CB E:ASP87 4.7 2.6 1.0
F2 E:AF31002 4.7 8.5 1.0
F3 E:AF31002 4.9 5.4 1.0
C E:SER151 4.9 2.0 1.0
OG E:SER151 5.0 2.9 1.0

Magnesium binding site 6 out of 7 in 1pcq

Go back to Magnesium Binding Sites List in 1pcq
Magnesium binding site 6 out of 7 in the Crystal Structure of Groel-Groes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Groel-Groes within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1101

b:2.0
occ:1.00
O2A F:ADP1100 1.7 2.1 1.0
F1 F:AF31102 1.8 7.6 1.0
O1B F:ADP1100 2.0 2.0 1.0
OD1 F:ASP87 2.5 2.5 1.0
PA F:ADP1100 2.9 2.6 1.0
OD2 F:ASP87 3.2 2.8 1.0
PB F:ADP1100 3.2 2.0 1.0
CG F:ASP87 3.2 3.0 1.0
O5' F:ADP1100 3.3 3.3 1.0
O3A F:ADP1100 3.4 3.4 1.0
AL F:AF31102 3.6 12.1 1.0
O3B F:ADP1100 3.9 2.7 1.0
O1A F:ADP1100 4.2 2.0 1.0
O F:SER151 4.3 2.2 1.0
O2B F:ADP1100 4.5 2.0 1.0
N F:GLY88 4.6 2.0 1.0
OD2 F:ASP398 4.6 9.2 1.0
C5' F:ADP1100 4.7 4.2 1.0
F2 F:AF31102 4.7 8.7 1.0
CB F:ASP87 4.7 2.7 1.0
CA F:SER151 4.8 2.0 1.0
F3 F:AF31102 4.8 5.7 1.0
K F:K1103 5.0 24.0 1.0

Magnesium binding site 7 out of 7 in 1pcq

Go back to Magnesium Binding Sites List in 1pcq
Magnesium binding site 7 out of 7 in the Crystal Structure of Groel-Groes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Groel-Groes within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg1201

b:2.0
occ:1.00
F1 G:AF31202 1.7 7.4 1.0
O2A G:ADP1200 1.8 2.0 1.0
O1B G:ADP1200 2.0 2.0 1.0
OD1 G:ASP87 2.4 2.6 1.0
PA G:ADP1200 3.0 2.4 1.0
OD2 G:ASP87 3.2 2.4 1.0
PB G:ADP1200 3.2 2.3 1.0
CG G:ASP87 3.2 2.9 1.0
O5' G:ADP1200 3.3 3.6 1.0
O3A G:ADP1200 3.5 3.5 1.0
AL G:AF31202 3.6 12.2 1.0
O3B G:ADP1200 3.9 2.7 1.0
O1A G:ADP1200 4.3 2.0 1.0
O G:SER151 4.3 2.3 1.0
O2B G:ADP1200 4.5 2.1 1.0
OD2 G:ASP398 4.6 9.1 1.0
N G:GLY88 4.6 2.0 1.0
F2 G:AF31202 4.6 8.8 1.0
C5' G:ADP1200 4.7 4.2 1.0
CB G:ASP87 4.7 2.7 1.0
CA G:SER151 4.8 2.0 1.0
F3 G:AF31202 4.8 5.3 1.0
C G:SER151 5.0 2.0 1.0

Reference:

C.Chaudhry, G.W.Farr, M.J.Todd, H.S.Rye, A.T.Brunger, P.D.Adams, A.L.Horwich, P.B.Sigler. Role of the Gamma-Phosphate of Atp in Triggering Protein Folding By Groel-Groes: Function, Structure and Energetics. Embo J. V. 22 4877 2003.
ISSN: ISSN 0261-4189
PubMed: 14517228
DOI: 10.1093/EMBOJ/CDG477
Page generated: Mon Dec 14 06:35:57 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy