Magnesium in PDB 1php: Structure of the Adp Complex of the 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus at 1.65 Angstroms

Enzymatic activity of Structure of the Adp Complex of the 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus at 1.65 Angstroms

All present enzymatic activity of Structure of the Adp Complex of the 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus at 1.65 Angstroms:
2.7.2.3;

Protein crystallography data

The structure of Structure of the Adp Complex of the 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus at 1.65 Angstroms, PDB code: 1php was solved by G.J.Davies, H.C.Watson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	10.00 / 1.65
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	40.410, 73.930, 68.570, 90.00, 99.80, 90.00
*R / R_free (%)*	n/a / n/a

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Adp Complex of the 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus at 1.65 Angstroms (pdb code 1php). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Adp Complex of the 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus at 1.65 Angstroms, PDB code: 1php:

Magnesium binding site 1 out of 1 in 1php

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Magnesium Binding Sites List in 1php

Magnesium binding site 1 out of 1 in the Structure of the Adp Complex of the 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus at 1.65 Angstroms

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Adp Complex of the 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus at 1.65 Angstroms within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg395 b:21.1 occ:1.00	OD2	A:ASP352	2.0	20.7	1.0
	O2B	A:ADP396	2.2	17.5	1.0
	O	A:HOH1022	2.2	25.2	1.0
	O1A	A:ADP396	2.2	18.0	1.0
	O	A:HOH1021	2.3	28.4	1.0
	O	A:HOH1023	2.3	24.6	1.0
	CG	A:ASP352	3.1	25.2	1.0
	PA	A:ADP396	3.3	17.9	1.0
	PB	A:ADP396	3.3	16.0	1.0
	O3A	A:ADP396	3.5	16.0	1.0
	CB	A:ASP352	3.9	19.0	1.0
	N	A:ASP352	4.0	17.9	1.0
	O	A:HOH1025	4.1	28.5	1.0
	O3B	A:ADP396	4.1	15.9	1.0
	OD1	A:ASP352	4.1	33.5	1.0
	O5'	A:ADP396	4.2	14.6	1.0
	O2A	A:ADP396	4.3	17.4	1.0
	O	A:HOH465	4.3	42.8	1.0
	C5'	A:ADP396	4.3	14.2	1.0
	O	A:HOH900	4.3	72.6	1.0
	O	A:HOH477	4.3	49.3	1.0
	O1B	A:ADP396	4.4	14.5	1.0
	O	A:HOH466	4.4	35.9	1.0
	CA	A:ASP352	4.6	14.6	1.0
	O	A:HOH763	4.7	61.0	1.0
	O	A:HOH1026	4.7	28.5	1.0
	N	A:GLY351	4.8	15.9	1.0
	CA	A:GLY351	4.9	18.5	1.0
	C	A:GLY351	4.9	19.8	1.0

Reference:

G.J.Davies, S.J.Gamblin, J.A.Littlechild, Z.Dauter, K.S.Wilson, H.C.Watson. Structure of the Adp Complex of the 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus at 1.65 A. Acta Crystallogr.,Sect.D V. 50 202 1994.
ISSN: ISSN 0907-4449
PubMed: 15299460
DOI: 10.1107/S0907444993011138

Page generated: Tue Aug 13 10:52:29 2024

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