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Magnesium in PDB 1q6z: High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate

Enzymatic activity of High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate

All present enzymatic activity of High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate:
4.1.1.7;

Protein crystallography data

The structure of High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate, PDB code: 1q6z was solved by A.K.Bera, M.S.Hasson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 81.371, 95.600, 136.881, 90.00, 90.00, 90.00
R / Rfree (%) 12.2 / 14

Other elements in 1q6z:

The structure of High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate (pdb code 1q6z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate, PDB code: 1q6z:

Magnesium binding site 1 out of 1 in 1q6z

Go back to Magnesium Binding Sites List in 1q6z
Magnesium binding site 1 out of 1 in the High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg531

b:8.7
occ:0.65
 O A:LEU118 2.5 6.6 1.0
O A:ARG120 2.5 7.2 1.0
O A:ASN117 2.7 6.7 1.0
O A:HOH1092 3.2 7.7 0.5
C A:LEU118 3.2 5.7 1.0
C A:ARG120 3.7 6.6 1.0
CA A:LEU118 3.7 6.0 1.0
C A:ASN117 3.8 5.9 1.0
N A:ARG120 3.8 6.4 1.0
N A:PRO119 4.2 6.3 1.0
CA A:ARG120 4.2 6.5 1.0
N A:LEU118 4.2 5.9 1.0
CE A:MET79 4.3 24.9 0.8
C A:PRO119 4.3 6.6 1.0
CB A:ARG120 4.5 7.2 1.0
CA A:PRO119 4.6 6.9 1.0
N A:PRO121 4.7 6.5 1.0
CD A:PRO121 4.9 7.5 1.0
O A:PRO119 5.0 7.8 1.0

Reference:

A.K.Bera, N.L.Anderson, M.S.Hasson. High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase From Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate To Be Published.
Page generated: Mon Dec 14 06:37:07 2020

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