Magnesium in PDB 1q8y: The Structure of the Yeast Sr Protein Kinase, SKY1P, with Bound Adp

The structure of The Structure of the Yeast Sr Protein Kinase, SKY1P, with Bound Adp, PDB code: 1q8y was solved by B.Nolen, J.Ngo, S.Chakrabarti, D.Vu, J.A.Adams, G.Ghosh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.92 / 2.05
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	71.577, 88.653, 133.786, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 24.4

The binding sites of Magnesium atom in the The Structure of the Yeast Sr Protein Kinase, SKY1P, with Bound Adp (pdb code 1q8y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of the Yeast Sr Protein Kinase, SKY1P, with Bound Adp, PDB code: 1q8y:

Magnesium binding site 1 out of 1 in the The Structure of the Yeast Sr Protein Kinase, SKY1P, with Bound Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of the Yeast Sr Protein Kinase, SKY1P, with Bound Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:29.6 occ:1.00 O2A A:ADP810 2.1 38.2 1.0 OD2 A:ASP550 2.2 25.1 1.0 O1B A:ADP810 2.4 38.0 1.0 OD1 A:ASN299 2.5 26.1 1.0 CG A:ASP550 3.2 24.7 1.0 PB A:ADP810 3.5 38.0 1.0 CG A:ASN299 3.5 25.3 1.0 PA A:ADP810 3.5 35.2 1.0 CB A:ASP550 3.6 23.7 1.0 O A:HOH866 3.7 35.5 1.0 ND2 A:ASN299 3.8 24.0 1.0 O3B A:ADP810 3.9 38.5 1.0 O3A A:ADP810 4.0 36.9 1.0 OD1 A:ASP550 4.3 24.4 1.0 O5' A:ADP810 4.4 35.9 1.0 O A:HOH906 4.4 37.6 1.0 C5' A:ADP810 4.5 32.9 1.0 O1A A:ADP810 4.5 36.6 1.0 CB A:ASN299 4.8 23.1 1.0 O2B A:ADP810 4.8 37.1 1.0 O A:GLU298 4.9 25.9 1.0

B.Nolen, J.Ngo, S.Chakrabarti, D.Vu, J.A.Adams, G.Ghosh. Nucleotide-Induced Conformational Changes in the Saccharomyces Cerevisiae Sr Protein Kinase, SKY1P, Revealed By X-Ray Crystallography Biochemistry V. 42 9575 2003.
ISSN: ISSN 0006-2960
PubMed: 12911299
DOI: 10.1021/BI0344331