Atomistry » Magnesium » PDB 1q3b-1qc1 » 1qa6
Atomistry »
  Magnesium »
    PDB 1q3b-1qc1 »
      1qa6 »

Magnesium in PDB 1qa6: Crystal Structure of A Conserved Ribosomal Protein-Rna Complex

Protein crystallography data

The structure of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex, PDB code: 1qa6 was solved by G.L.Conn, D.E.Draper, E.E.Lattman, A.G.Gittis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 150.675, 150.675, 63.841, 90.00, 90.00, 90.00
R / Rfree (%) 24 / 32.1

Other elements in 1qa6:

The structure of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex also contains other interesting chemical elements:

Osmium (Os) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex (pdb code 1qa6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex, PDB code: 1qa6:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1qa6

Go back to Magnesium Binding Sites List in 1qa6
Magnesium binding site 1 out of 4 in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg201

b:34.3
occ:1.00
O4 C:U108 3.9 19.8 1.0
C5 C:U108 4.0 19.8 1.0
C4 C:U108 4.1 19.8 1.0
O6 C:G109 4.6 20.1 1.0
N7 C:G109 4.6 20.1 1.0
O2 C:U110 4.7 22.9 1.0
O2' C:U110 4.8 22.9 1.0
C6 C:U108 4.9 19.8 1.0

Magnesium binding site 2 out of 4 in 1qa6

Go back to Magnesium Binding Sites List in 1qa6
Magnesium binding site 2 out of 4 in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg202

b:21.4
occ:1.00
OP1 C:A107 3.6 28.4 1.0
N1 C:A139 3.7 22.3 1.0
O4 C:U151 4.1 29.0 1.0
O6 C:G121 4.2 20.1 1.0
N6 C:A139 4.3 22.3 1.0
C6 C:A139 4.5 22.3 1.0
N7 C:G121 4.5 20.1 1.0
C2 C:A139 4.5 22.3 1.0
N4 C:C150 4.8 28.8 1.0
C6 C:G121 4.9 20.1 1.0
P C:A107 4.9 28.4 1.0
C4 C:U151 5.0 29.0 1.0

Magnesium binding site 3 out of 4 in 1qa6

Go back to Magnesium Binding Sites List in 1qa6
Magnesium binding site 3 out of 4 in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg205

b:34.3
occ:1.00
O4 D:U108 3.9 19.8 1.0
C5 D:U108 4.0 19.8 1.0
C4 D:U108 4.1 19.8 1.0
O6 D:G109 4.6 20.1 1.0
N7 D:G109 4.6 20.1 1.0
O2 D:U110 4.7 22.9 1.0
O2' D:U110 4.8 22.9 1.0
C6 D:U108 4.9 19.8 1.0

Magnesium binding site 4 out of 4 in 1qa6

Go back to Magnesium Binding Sites List in 1qa6
Magnesium binding site 4 out of 4 in the Crystal Structure of A Conserved Ribosomal Protein-Rna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of A Conserved Ribosomal Protein-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg206

b:21.4
occ:1.00
OP1 D:A107 3.6 28.4 1.0
N1 D:A139 3.7 22.3 1.0
O4 D:U151 4.1 29.0 1.0
O6 D:G121 4.2 20.1 1.0
N6 D:A139 4.3 22.3 1.0
C6 D:A139 4.5 22.3 1.0
N7 D:G121 4.5 20.1 1.0
C2 D:A139 4.5 22.3 1.0
N4 D:C150 4.8 28.8 1.0
C6 D:G121 4.9 20.1 1.0
P D:A107 4.9 28.4 1.0
C4 D:U151 5.0 29.0 1.0

Reference:

G.L.Conn, D.E.Draper, E.E.Lattman, A.G.Gittis. Crystal Structure of A Conserved Ribosomal Protein-Rna Complex. Science V. 284 1171 1999.
ISSN: ISSN 0036-8075
PubMed: 10325228
DOI: 10.1126/SCIENCE.284.5417.1171
Page generated: Tue Aug 13 11:13:52 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy