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Magnesium in PDB 1qf9: pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog in Ump/Cmp Kinase

Enzymatic activity of pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog in Ump/Cmp Kinase

All present enzymatic activity of pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog in Ump/Cmp Kinase:
2.7.4.14;

Protein crystallography data

The structure of pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog in Ump/Cmp Kinase, PDB code: 1qf9 was solved by I.Schlichting, J.Reinstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.000, 78.000, 100.600, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 24.4

Other elements in 1qf9:

The structure of pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog in Ump/Cmp Kinase also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Aluminium (Al) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog in Ump/Cmp Kinase (pdb code 1qf9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog in Ump/Cmp Kinase, PDB code: 1qf9:

Magnesium binding site 1 out of 1 in 1qf9

Go back to Magnesium Binding Sites List in 1qf9
Magnesium binding site 1 out of 1 in the pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog in Ump/Cmp Kinase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog in Ump/Cmp Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg500

b:19.2
occ:1.00
 O2B A:ADP195 2.2 13.4 1.0
F2 A:ALF499 2.3 24.9 1.0
O A:HOH227 2.3 23.4 1.0
O A:HOH215 2.3 14.5 1.0
O A:HOH220 2.4 12.5 1.0
O A:HOH198 2.4 29.7 1.0
F3 A:ALF499 3.0 29.5 1.0
PB A:ADP195 3.3 14.1 1.0
O3B A:ADP195 3.4 12.7 1.0
AL A:ALF499 3.4 23.9 1.0
O1P A:C5P196 4.0 16.3 1.0
O2P A:C5P196 4.1 14.4 1.0
O3P A:C5P196 4.1 16.1 1.0
NH1 A:ARG137 4.2 16.0 1.0
P A:C5P196 4.2 15.9 1.0
N A:GLY20 4.2 11.7 1.0
O3A A:ADP195 4.3 13.8 1.0
O A:HOH197 4.3 19.4 1.0
OD2 A:ASP89 4.3 12.5 1.0
O2A A:ADP195 4.3 11.3 1.0
O1B A:ADP195 4.4 13.8 1.0
OG A:SER36 4.4 12.5 1.0
CA A:GLY20 4.4 11.6 1.0
F4 A:ALF499 4.5 24.7 1.0
NH1 A:ARG131 4.5 12.7 1.0
O A:HOH208 4.5 21.8 1.0
OD1 A:ASP89 4.6 14.4 1.0
O A:HOH553 4.6 15.5 0.8
PA A:ADP195 4.8 13.8 1.0
CG A:ASP89 4.9 14.3 1.0
F1 A:ALF499 4.9 27.8 1.0

Reference:

I.Schlichting, J.Reinstein. pH Influences Fluoride Coordination Number of the Alfx Phosphoryl Transfer Transition State Analog. Nat.Struct.Biol. V. 6 721 1999.
ISSN: ISSN 1072-8368
PubMed: 10426946
DOI: 10.1038/11485
Page generated: Mon Dec 14 06:38:56 2020

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