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Magnesium in PDB 1qgq: Udp-Manganese Complex of Spsa From Bacillus Subtilis

Protein crystallography data

The structure of Udp-Manganese Complex of Spsa From Bacillus Subtilis, PDB code: 1qgq was solved by S.J.Charnock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 47.330, 142.360, 81.240, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 21

Other elements in 1qgq:

The structure of Udp-Manganese Complex of Spsa From Bacillus Subtilis also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Udp-Manganese Complex of Spsa From Bacillus Subtilis (pdb code 1qgq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Udp-Manganese Complex of Spsa From Bacillus Subtilis, PDB code: 1qgq:

Magnesium binding site 1 out of 1 in 1qgq

Go back to Magnesium Binding Sites List in 1qgq
Magnesium binding site 1 out of 1 in the Udp-Manganese Complex of Spsa From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Udp-Manganese Complex of Spsa From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:42.7
occ:1.00
O A:HOH487 2.2 49.4 1.0
O A:HOH567 2.2 61.2 1.0
O A:HOH434 2.3 42.6 1.0
O2 A:GOL310 2.4 47.4 1.0
O1B A:UDP311 2.7 48.5 1.0
O A:HOH580 3.2 63.0 1.0
C2 A:GOL310 3.3 46.5 1.0
C3 A:GOL310 4.1 45.8 1.0
OD1 A:ASP158 4.1 34.1 1.0
PB A:UDP311 4.2 48.0 1.0
OD2 A:ASP191 4.3 27.5 1.0
OD1 A:ASP191 4.4 28.8 1.0
O A:ARG188 4.4 32.6 1.0
O A:HOH491 4.4 49.8 1.0
O3 A:GOL310 4.4 44.4 1.0
O3B A:UDP311 4.5 48.1 1.0
O1 A:GOL310 4.6 46.7 1.0
C1 A:GOL310 4.6 46.6 1.0
CG A:ASP191 4.7 27.1 1.0
O2B A:UDP311 4.8 48.6 1.0

Reference:

S.J.Charnock, G.J.Davies. Structure of the Nucleotide-Diphospho-Sugar Transferase, Spsa From Bacillus Subtilis, in Native and Nucleotide-Complexed Forms. Biochemistry V. 38 6380 1999.
ISSN: ISSN 0006-2960
PubMed: 10350455
DOI: 10.1021/BI990270Y
Page generated: Mon Dec 14 06:38:59 2020

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