Atomistry » Magnesium » PDB 1qc1-1qs4 » 1qgx
Atomistry »
  Magnesium »
    PDB 1qc1-1qs4 »
      1qgx »

Magnesium in PDB 1qgx: X-Ray Structure of Yeast HAL2P

Enzymatic activity of X-Ray Structure of Yeast HAL2P

All present enzymatic activity of X-Ray Structure of Yeast HAL2P:
3.1.3.7;

Protein crystallography data

The structure of X-Ray Structure of Yeast HAL2P, PDB code: 1qgx was solved by A.Albert, L.Yenush, M.R.Gil-Mascarell, P.L.Rodriguez, J.Patel, M.Martinez-Ripoll, T.L.Blundell, R.Serrano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.00 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.680, 44.910, 71.600, 90.00, 111.08, 90.00
R / Rfree (%) 19.7 / 23.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of Yeast HAL2P (pdb code 1qgx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Structure of Yeast HAL2P, PDB code: 1qgx:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1qgx

Go back to Magnesium Binding Sites List in 1qgx
Magnesium binding site 1 out of 2 in the X-Ray Structure of Yeast HAL2P


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Yeast HAL2P within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:13.0
occ:1.00
OD1 A:ASP142 2.2 8.8 1.0
OE1 A:GLU72 2.2 12.3 1.0
O A:HOH410 2.3 10.8 1.0
O3 A:PO4404 2.3 14.2 1.0
O2 A:PO4404 2.3 16.1 1.0
O A:ILE144 2.4 11.4 1.0
P A:PO4404 3.0 24.1 1.0
CG A:ASP142 3.1 12.4 1.0
CD A:GLU72 3.3 14.6 1.0
C A:ILE144 3.3 10.7 1.0
OD2 A:ASP142 3.4 12.2 1.0
OE2 A:GLU72 3.7 14.7 1.0
O1 A:PO4404 3.8 17.7 1.0
MG A:MG403 3.9 18.1 1.0
CA A:ASP145 4.0 9.9 1.0
N A:ASP145 4.0 8.4 1.0
O4 A:PO4404 4.0 15.2 1.0
OG1 A:THR147 4.0 11.5 1.0
N A:ILE144 4.1 10.4 1.0
OE2 A:GLU73 4.2 11.5 1.0
OD2 A:ASP49 4.2 10.5 1.0
CA A:ILE144 4.3 9.9 1.0
CB A:ASP142 4.4 10.6 1.0
CD A:PRO143 4.5 10.8 1.0
O A:HOH760 4.5 16.1 1.0
CG A:GLU72 4.5 11.7 1.0
O A:HOH408 4.5 19.4 1.0
O3' A:AMP405 4.6 15.7 1.0
CA A:ASP142 4.6 9.3 1.0
CB A:GLU72 4.6 10.6 1.0
N A:PRO143 4.6 9.2 1.0
C A:ASP142 4.7 9.0 1.0
N A:GLY146 4.8 10.4 1.0
CB A:ILE144 4.8 11.2 1.0
C A:ASP145 4.9 6.6 1.0
CG A:PRO143 4.9 11.1 1.0
CB A:ASP145 5.0 12.1 1.0

Magnesium binding site 2 out of 2 in 1qgx

Go back to Magnesium Binding Sites List in 1qgx
Magnesium binding site 2 out of 2 in the X-Ray Structure of Yeast HAL2P


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Structure of Yeast HAL2P within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:18.1
occ:1.00
OE2 A:GLU72 2.3 14.7 1.0
O A:HOH408 2.3 19.4 1.0
O1 A:PO4404 2.4 17.7 1.0
O A:HOH409 2.4 18.4 1.0
O A:HOH411 2.5 25.3 1.0
O2 A:PO4404 2.5 16.1 1.0
P A:PO4404 3.0 24.1 1.0
CD A:GLU72 3.3 14.6 1.0
OE1 A:GLU72 3.6 12.3 1.0
NZ A:LYS39 3.7 17.8 1.0
O A:PRO44 3.8 14.3 1.0
MG A:MG401 3.9 13.0 1.0
O1 A:SO4406 3.9 21.6 1.0
O A:HOH760 3.9 16.1 1.0
O3 A:PO4404 3.9 14.2 1.0
OE2 A:GLU73 4.0 11.5 1.0
O4 A:PO4404 4.0 15.2 1.0
OG A:SER43 4.1 12.2 1.0
CE A:LYS39 4.1 19.9 1.0
O2 A:SO4406 4.2 23.8 1.0
O A:HOH759 4.3 31.7 1.0
OG1 A:THR147 4.3 11.5 1.0
O A:HOH410 4.5 10.8 1.0
S A:SO4406 4.6 21.1 1.0
CB A:SER43 4.6 13.5 1.0
CG A:GLU72 4.6 11.7 1.0
O A:HOH758 4.6 21.6 1.0
CD A:GLU73 4.9 11.0 1.0
CB A:THR147 4.9 10.9 1.0

Reference:

A.Albert, L.Yenush, M.R.Gil-Mascarell, P.L.Rodriguez, S.Patel, M.Martinez-Ripoll, T.L.Blundell, R.Serrano. X-Ray Structure of Yeast HAL2P, A Major Target of Lithium and Sodium Toxicity, and Identification of Framework Interactions Determining Cation Sensitivity. J.Mol.Biol. V. 295 927 2000.
ISSN: ISSN 0022-2836
PubMed: 10656801
DOI: 10.1006/JMBI.1999.3408
Page generated: Mon Dec 14 06:39:02 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy