Magnesium in PDB 1rdw: Actin Crystal Dynamics: Structural Implications For F-Actin Nucleation, Polymerization and Branching Mediated By the Anti-Parallel Dimer

The structure of Actin Crystal Dynamics: Structural Implications For F-Actin Nucleation, Polymerization and Branching Mediated By the Anti-Parallel Dimer, PDB code: 1rdw was solved by R.Reutzel, C.Yoshioka, L.Govindasamy, E.G.Yarmola, M.Agbandje-Mckenna, M.R.Bubb, R.Mckenna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.30
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	100.917, 100.917, 103.871, 90.00, 90.00, 90.00
R / Rfree (%)	16.2 / 22.4

The binding sites of Magnesium atom in the Actin Crystal Dynamics: Structural Implications For F-Actin Nucleation, Polymerization and Branching Mediated By the Anti-Parallel Dimer (pdb code 1rdw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Actin Crystal Dynamics: Structural Implications For F-Actin Nucleation, Polymerization and Branching Mediated By the Anti-Parallel Dimer, PDB code: 1rdw:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Actin Crystal Dynamics: Structural Implications For F-Actin Nucleation, Polymerization and Branching Mediated By the Anti-Parallel Dimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Actin Crystal Dynamics: Structural Implications For F-Actin Nucleation, Polymerization and Branching Mediated By the Anti-Parallel Dimer within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg392 b:14.4 occ:1.00 O2B X:ATP390 2.2 30.2 1.0 O X:HOH425 2.2 22.0 1.0 O X:HOH424 2.3 28.6 1.0 O3G X:ATP390 2.3 24.7 1.0 O X:HOH423 2.3 25.8 1.0 O X:HOH426 2.3 23.6 1.0 O X:HOH472 2.9 37.2 1.0 PB X:ATP390 3.4 27.6 1.0 PG X:ATP390 3.4 24.3 1.0 O3B X:ATP390 3.8 29.9 1.0 O1G X:ATP390 3.9 23.1 1.0 O3A X:ATP390 4.1 27.5 1.0 OE1 X:GLN137 4.1 22.1 1.0 O X:HOH404 4.2 24.1 1.0 CA X:GLY13 4.3 25.4 1.0 OD2 X:ASP154 4.4 24.6 1.0 CD X:GLN137 4.4 26.1 1.0 NZ X:LYS18 4.4 27.7 1.0 O1A X:ATP390 4.4 28.5 1.0 OD2 X:ASP11 4.6 24.1 1.0 OD1 X:ASP11 4.6 21.7 1.0 O X:HOH401 4.6 26.8 1.0 OD1 X:ASP154 4.6 22.4 1.0 O1B X:ATP390 4.7 32.3 1.0 PA X:ATP390 4.8 27.7 1.0 O2G X:ATP390 4.8 24.9 1.0 NE2 X:GLN137 4.8 15.7 1.0 CG X:ASP154 5.0 26.5 1.0

Magnesium binding site 2 out of 2 in the Actin Crystal Dynamics: Structural Implications For F-Actin Nucleation, Polymerization and Branching Mediated By the Anti-Parallel Dimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Actin Crystal Dynamics: Structural Implications For F-Actin Nucleation, Polymerization and Branching Mediated By the Anti-Parallel Dimer within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg393 b:41.8 occ:1.00 NH1 X:ARG183 3.7 32.5 1.0 NH2 X:ARG206 3.9 36.8 1.0 NH1 X:ARG206 4.1 38.8 1.0 CD X:ARG183 4.1 26.3 1.0 CZ X:ARG206 4.5 37.8 1.0 CZ X:ARG183 4.8 29.3 1.0 NE X:ARG183 4.9 28.8 1.0 CE1 X:TYR69 4.9 32.4 1.0

R.Reutzel, C.Yoshioka, L.Govindasamy, E.G.Yarmola, M.Agbandje-Mckenna, M.R.Bubb, R.Mckenna. Actin Crystal Dynamics: Structural Implications For F-Actin Nucleation, Polymerization, and Branching Mediated By the Anti-Parallel Dimer. J.Struct.Biol. V. 146 291 2004.
ISSN: ISSN 1047-8477
PubMed: 15099571
DOI: 10.1016/J.JSB.2003.12.006