Atomistry » Magnesium » PDB 1rc5-1rtd » 1rif
Atomistry »
  Magnesium »
    PDB 1rc5-1rtd »
      1rif »

Magnesium in PDB 1rif: Crystal Structure of the Uvsw Helicase From Bacteriophage T4

Protein crystallography data

The structure of Crystal Structure of the Uvsw Helicase From Bacteriophage T4, PDB code: 1rif was solved by E.A.Sickmier, S.W.White, K.N.Kreuzer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.739, 95.181, 86.278, 90.00, 95.40, 90.00
R / Rfree (%) 21.8 / 24.6

Other elements in 1rif:

The structure of Crystal Structure of the Uvsw Helicase From Bacteriophage T4 also contains other interesting chemical elements:

Gold (Au) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Uvsw Helicase From Bacteriophage T4 (pdb code 1rif). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of the Uvsw Helicase From Bacteriophage T4, PDB code: 1rif:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 1rif

Go back to Magnesium Binding Sites List in 1rif
Magnesium binding site 1 out of 3 in the Crystal Structure of the Uvsw Helicase From Bacteriophage T4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Uvsw Helicase From Bacteriophage T4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg286

b:16.2
occ:1.00
O A:HOH354 2.6 43.0 1.0
O A:HOH295 2.6 38.3 1.0
O A:HOH414 2.9 44.0 1.0
NE2 A:GLN67 3.0 45.1 1.0
CD A:GLN67 3.7 44.0 1.0
CG1 A:VAL273 3.8 21.9 1.0
OE1 A:GLN67 4.0 45.6 1.0
CG2 A:VAL273 4.2 23.0 1.0
CB A:VAL273 4.3 20.6 1.0
CG A:GLN67 4.7 40.3 1.0

Magnesium binding site 2 out of 3 in 1rif

Go back to Magnesium Binding Sites List in 1rif
Magnesium binding site 2 out of 3 in the Crystal Structure of the Uvsw Helicase From Bacteriophage T4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Uvsw Helicase From Bacteriophage T4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg287

b:12.8
occ:1.00
CD1 B:TYR117 3.8 21.9 1.0
CE1 B:TYR117 3.8 22.3 1.0
CB B:ALA139 3.8 24.2 1.0
CG B:PRO136 3.9 22.2 1.0
CZ B:TYR117 3.9 23.9 1.0
CG B:TYR117 3.9 21.8 1.0
CD2 B:TYR117 4.0 23.6 1.0
CD B:PRO136 4.0 20.4 1.0
CE2 B:TYR117 4.0 22.5 1.0
CA B:ALA139 4.4 25.1 1.0
OH B:TYR117 4.6 24.8 1.0
CB B:TYR117 4.7 20.2 1.0
N B:ALA139 4.9 26.8 1.0
O B:HOH318 5.0 33.5 1.0

Magnesium binding site 3 out of 3 in 1rif

Go back to Magnesium Binding Sites List in 1rif
Magnesium binding site 3 out of 3 in the Crystal Structure of the Uvsw Helicase From Bacteriophage T4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Uvsw Helicase From Bacteriophage T4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg288

b:9.8
occ:1.00
O B:HOH387 2.4 37.6 1.0
NE2 B:GLN67 2.5 42.7 1.0
O B:HOH394 3.0 31.0 1.0
CG1 B:VAL273 3.5 22.8 1.0
CD B:GLN67 3.6 40.3 1.0
CG2 B:VAL273 4.0 26.7 1.0
CB B:VAL273 4.1 23.2 1.0
CG B:GLN67 4.3 35.6 1.0
OE1 B:GLN67 4.4 41.7 1.0

Reference:

E.A.Sickmier, K.N.Kreuzer, S.W.White. The Crystal Structure of the Uvsw Helicase From Bacteriophage T4. Structure V. 12 583 2004.
ISSN: ISSN 0969-2126
PubMed: 15062081
DOI: 10.1016/J.STR.2004.02.016
Page generated: Mon Dec 14 06:42:39 2020

Last articles

Br in 7L32
Br in 6ZVO
Br in 6YVZ
Br in 6YVW
Br in 6TQD
Br in 6VHQ
Br in 6TU4
Br in 6VD4
Br in 6VDR
Br in 6VD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy