Magnesium in PDB 1rn8: Crystal Structure of Dutpase Complexed with Substrate Analogue Imido-Dutp

All present enzymatic activity of Crystal Structure of Dutpase Complexed with Substrate Analogue Imido-Dutp:
3.6.1.23;

The structure of Crystal Structure of Dutpase Complexed with Substrate Analogue Imido-Dutp, PDB code: 1rn8 was solved by O.Barabas, V.Pongracz, J.Kovari, M.Wilmanns, B.G.Vertessy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.93
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	74.618, 74.618, 99.580, 90.00, 90.00, 120.00
R / Rfree (%)	13.7 / 18

The binding sites of Magnesium atom in the Crystal Structure of Dutpase Complexed with Substrate Analogue Imido-Dutp (pdb code 1rn8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Dutpase Complexed with Substrate Analogue Imido-Dutp, PDB code: 1rn8:

Magnesium binding site 1 out of 1 in the Crystal Structure of Dutpase Complexed with Substrate Analogue Imido-Dutp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dutpase Complexed with Substrate Analogue Imido-Dutp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg999 b:15.3 occ:1.00 O A:HOH1079 2.0 11.6 1.0 O1A A:DUP777 2.0 13.6 1.0 O1B A:DUP777 2.0 12.2 1.0 O2G A:DUP777 2.1 15.1 1.0 O A:HOH1045 2.2 18.7 1.0 O A:HOH1019 2.2 13.7 1.0 PB A:DUP777 3.1 15.5 1.0 PG A:DUP777 3.2 16.5 1.0 PA A:DUP777 3.3 14.8 1.0 O A:HOH1000 3.3 17.1 1.0 O3B A:DUP777 3.5 17.1 1.0 N3A A:DUP777 3.6 16.4 1.0 O A:HOH1073 3.8 29.5 1.0 O1G A:DUP777 3.9 17.6 1.0 O A:HOH1014 4.2 14.5 1.0 O2A A:DUP777 4.3 18.7 1.0 O5' A:DUP777 4.4 11.2 1.0 O3G A:DUP777 4.4 14.3 1.0 O2B A:DUP777 4.5 13.7 1.0 C5' A:DUP777 4.5 14.4 1.0 O A:HOH1144 4.6 47.8 1.0 O A:HOH1003 4.9 18.2 1.0

O.Barabas, V.Pongracz, J.Kovari, M.Wilmanns, B.G.Vertessy. Structural Insights Into the Catalytic Mechanism of Phosphate Ester Hydrolysis By Dutpase. J.Biol.Chem. V. 279 42907 2004.
ISSN: ISSN 0021-9258
PubMed: 15208312
DOI: 10.1074/JBC.M406135200