Magnesium in PDB 1rwt: Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Protein crystallography data
The structure of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution, PDB code: 1rwt
was solved by
Z.Liu,
H.Yan,
K.Wang,
T.Kuang,
J.Zhang,
L.Gui,
X.An,
W.Chang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
2.72
|
Space group
|
H 3 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
261.787,
261.787,
660.498,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.4 /
22.1
|
Other elements in 1rwt:
The structure of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
(pdb code 1rwt). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 140 binding sites of Magnesium where determined in the
Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution, PDB code: 1rwt:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 140 in 1rwt
Go back to
Magnesium Binding Sites List in 1rwt
Magnesium binding site 1 out
of 140 in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:36.7
occ:1.00
|
MG
|
A:CHL601
|
0.0
|
36.7
|
1.0
|
ND
|
A:CHL601
|
2.0
|
37.5
|
1.0
|
NB
|
A:CHL601
|
2.0
|
37.5
|
1.0
|
NC
|
A:CHL601
|
2.1
|
38.5
|
1.0
|
O
|
A:TYR24
|
2.1
|
36.4
|
1.0
|
NA
|
A:CHL601
|
2.2
|
37.8
|
1.0
|
C4D
|
A:CHL601
|
3.0
|
36.4
|
1.0
|
C4B
|
A:CHL601
|
3.0
|
37.7
|
1.0
|
C1B
|
A:CHL601
|
3.1
|
37.3
|
1.0
|
C1C
|
A:CHL601
|
3.1
|
39.3
|
1.0
|
C1D
|
A:CHL601
|
3.1
|
37.2
|
1.0
|
C4C
|
A:CHL601
|
3.1
|
38.9
|
1.0
|
C4A
|
A:CHL601
|
3.1
|
37.9
|
1.0
|
C1A
|
A:CHL601
|
3.2
|
37.1
|
1.0
|
C
|
A:TYR24
|
3.3
|
37.1
|
1.0
|
CHC
|
A:CHL601
|
3.4
|
38.6
|
1.0
|
CHB
|
A:CHL601
|
3.4
|
37.4
|
1.0
|
CHD
|
A:CHL601
|
3.5
|
38.0
|
1.0
|
CHA
|
A:CHL601
|
3.5
|
36.5
|
1.0
|
CA
|
A:TYR24
|
4.2
|
37.3
|
1.0
|
N
|
A:LEU25
|
4.2
|
38.7
|
1.0
|
CA
|
A:LEU25
|
4.2
|
38.2
|
1.0
|
C3D
|
A:CHL601
|
4.3
|
36.1
|
1.0
|
C2B
|
A:CHL601
|
4.3
|
36.8
|
1.0
|
C3B
|
A:CHL601
|
4.3
|
36.9
|
1.0
|
C2D
|
A:CHL601
|
4.3
|
36.4
|
1.0
|
C2C
|
A:CHL601
|
4.3
|
40.2
|
1.0
|
C3C
|
A:CHL601
|
4.3
|
40.0
|
1.0
|
C39
|
A:XAT622
|
4.4
|
28.9
|
1.0
|
C8
|
A:LHG630
|
4.5
|
42.5
|
1.0
|
C3A
|
A:CHL601
|
4.5
|
37.4
|
1.0
|
C2A
|
A:CHL601
|
4.5
|
37.2
|
1.0
|
C10
|
A:LHG630
|
4.6
|
46.4
|
1.0
|
CB
|
A:TYR24
|
4.8
|
38.1
|
1.0
|
C
|
A:LEU25
|
4.8
|
38.9
|
1.0
|
C9
|
A:LHG630
|
4.9
|
44.3
|
1.0
|
N
|
A:GLY26
|
4.9
|
39.5
|
1.0
|
CD2
|
A:LEU25
|
4.9
|
37.8
|
1.0
|
CBD
|
A:CHL601
|
5.0
|
35.9
|
1.0
|
|
Magnesium binding site 2 out
of 140 in 1rwt
Go back to
Magnesium Binding Sites List in 1rwt
Magnesium binding site 2 out
of 140 in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg602
b:28.4
occ:1.00
|
MG
|
A:CLA602
|
0.0
|
28.4
|
1.0
|
ND
|
A:CLA602
|
2.0
|
29.3
|
1.0
|
NB
|
A:CLA602
|
2.0
|
28.1
|
1.0
|
NC
|
A:CLA602
|
2.1
|
27.0
|
1.0
|
NA
|
A:CLA602
|
2.2
|
29.5
|
1.0
|
OE1
|
A:GLU65
|
2.2
|
28.2
|
1.0
|
C4D
|
A:CLA602
|
3.0
|
30.5
|
1.0
|
C1B
|
A:CLA602
|
3.1
|
28.1
|
1.0
|
C4B
|
A:CLA602
|
3.1
|
28.2
|
1.0
|
C1C
|
A:CLA602
|
3.1
|
26.6
|
1.0
|
C1D
|
A:CLA602
|
3.1
|
29.0
|
1.0
|
C4C
|
A:CLA602
|
3.1
|
26.2
|
1.0
|
CD
|
A:GLU65
|
3.1
|
29.3
|
1.0
|
C4A
|
A:CLA602
|
3.1
|
29.5
|
1.0
|
C1A
|
A:CLA602
|
3.2
|
30.7
|
1.0
|
CHC
|
A:CLA602
|
3.4
|
27.6
|
1.0
|
CHB
|
A:CLA602
|
3.4
|
29.0
|
1.0
|
CHD
|
A:CLA602
|
3.5
|
27.5
|
1.0
|
CHA
|
A:CLA602
|
3.5
|
31.0
|
1.0
|
C38
|
A:LUT621
|
3.6
|
21.2
|
1.0
|
OE2
|
A:GLU65
|
3.9
|
28.3
|
1.0
|
CG
|
A:GLU65
|
4.0
|
28.3
|
1.0
|
NE
|
A:ARG185
|
4.2
|
23.7
|
1.0
|
NH2
|
A:ARG185
|
4.2
|
22.2
|
1.0
|
C3D
|
A:CLA602
|
4.3
|
31.2
|
1.0
|
C2B
|
A:CLA602
|
4.3
|
28.2
|
1.0
|
C3B
|
A:CLA602
|
4.3
|
28.7
|
1.0
|
C2C
|
A:CLA602
|
4.3
|
25.7
|
1.0
|
C2D
|
A:CLA602
|
4.3
|
30.1
|
1.0
|
C3C
|
A:CLA602
|
4.3
|
25.0
|
1.0
|
CZ
|
A:ARG185
|
4.4
|
23.7
|
1.0
|
C3A
|
A:CLA602
|
4.5
|
30.1
|
1.0
|
C2A
|
A:CLA602
|
4.5
|
31.0
|
1.0
|
C28
|
A:LUT621
|
4.8
|
25.6
|
1.0
|
C25
|
A:LUT621
|
4.9
|
24.2
|
1.0
|
CB
|
A:GLU65
|
4.9
|
28.2
|
1.0
|
O2A
|
A:CLA602
|
5.0
|
32.2
|
1.0
|
CBD
|
A:CLA602
|
5.0
|
32.0
|
1.0
|
|
Magnesium binding site 3 out
of 140 in 1rwt
Go back to
Magnesium Binding Sites List in 1rwt
Magnesium binding site 3 out
of 140 in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg603
b:24.3
occ:1.00
|
MG
|
A:CLA603
|
0.0
|
24.3
|
1.0
|
ND
|
A:CLA603
|
2.0
|
25.2
|
1.0
|
NB
|
A:CLA603
|
2.1
|
24.1
|
1.0
|
NC
|
A:CLA603
|
2.1
|
24.2
|
1.0
|
NA
|
A:CLA603
|
2.2
|
25.8
|
1.0
|
NE2
|
A:HIS68
|
2.3
|
24.4
|
1.0
|
C4D
|
A:CLA603
|
3.0
|
26.1
|
1.0
|
C4B
|
A:CLA603
|
3.1
|
24.3
|
1.0
|
C1D
|
A:CLA603
|
3.1
|
25.4
|
1.0
|
C1B
|
A:CLA603
|
3.1
|
23.8
|
1.0
|
C1C
|
A:CLA603
|
3.1
|
24.0
|
1.0
|
C4C
|
A:CLA603
|
3.1
|
24.1
|
1.0
|
CE1
|
A:HIS68
|
3.2
|
23.6
|
1.0
|
C4A
|
A:CLA603
|
3.2
|
26.5
|
1.0
|
C1A
|
A:CLA603
|
3.2
|
27.2
|
1.0
|
CD2
|
A:HIS68
|
3.3
|
24.2
|
1.0
|
CHC
|
A:CLA603
|
3.4
|
23.8
|
1.0
|
CHD
|
A:CLA603
|
3.5
|
24.3
|
1.0
|
CHB
|
A:CLA603
|
3.5
|
24.3
|
1.0
|
CHA
|
A:CLA603
|
3.5
|
26.8
|
1.0
|
C10
|
A:CHL609
|
4.1
|
38.5
|
1.0
|
C9
|
A:CHL609
|
4.1
|
36.2
|
1.0
|
C3D
|
A:CLA603
|
4.2
|
25.6
|
1.0
|
C2D
|
A:CLA603
|
4.3
|
24.8
|
1.0
|
C2B
|
A:CLA603
|
4.3
|
25.1
|
1.0
|
C3B
|
A:CLA603
|
4.3
|
25.1
|
1.0
|
ND1
|
A:HIS68
|
4.3
|
25.6
|
1.0
|
C2C
|
A:CLA603
|
4.3
|
23.7
|
1.0
|
C3C
|
A:CLA603
|
4.3
|
23.5
|
1.0
|
CG
|
A:HIS68
|
4.4
|
25.6
|
1.0
|
C3A
|
A:CLA603
|
4.5
|
27.8
|
1.0
|
C2A
|
A:CLA603
|
4.5
|
29.2
|
1.0
|
C8
|
A:CHL609
|
4.5
|
37.9
|
1.0
|
C7
|
A:CHL609
|
4.6
|
37.9
|
1.0
|
CBD
|
A:CLA603
|
5.0
|
26.6
|
1.0
|
|
Magnesium binding site 4 out
of 140 in 1rwt
Go back to
Magnesium Binding Sites List in 1rwt
Magnesium binding site 4 out
of 140 in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg604
b:24.3
occ:1.00
|
MG
|
A:CLA604
|
0.0
|
24.3
|
1.0
|
ND
|
A:CLA604
|
2.0
|
24.6
|
1.0
|
NB
|
A:CLA604
|
2.0
|
21.5
|
1.0
|
NC
|
A:CLA604
|
2.1
|
21.4
|
1.0
|
O
|
A:HOH643
|
2.1
|
22.2
|
1.0
|
NA
|
A:CLA604
|
2.2
|
23.9
|
1.0
|
C4D
|
A:CLA604
|
3.0
|
25.1
|
1.0
|
C4B
|
A:CLA604
|
3.0
|
20.9
|
1.0
|
C1B
|
A:CLA604
|
3.1
|
22.1
|
1.0
|
C1C
|
A:CLA604
|
3.1
|
21.5
|
1.0
|
C1D
|
A:CLA604
|
3.1
|
25.0
|
1.0
|
C4C
|
A:CLA604
|
3.1
|
22.6
|
1.0
|
C4A
|
A:CLA604
|
3.1
|
23.4
|
1.0
|
C1A
|
A:CLA604
|
3.2
|
24.9
|
1.0
|
CHC
|
A:CLA604
|
3.4
|
21.0
|
1.0
|
CHD
|
A:CLA604
|
3.4
|
24.1
|
1.0
|
CHB
|
A:CLA604
|
3.5
|
22.8
|
1.0
|
CHA
|
A:CLA604
|
3.5
|
25.1
|
1.0
|
O23
|
A:NEX623
|
3.5
|
31.4
|
1.0
|
C24
|
A:NEX623
|
4.0
|
31.9
|
1.0
|
C23
|
A:NEX623
|
4.1
|
32.1
|
1.0
|
C3D
|
A:CLA604
|
4.2
|
25.5
|
1.0
|
C3B
|
A:CLA604
|
4.3
|
20.9
|
1.0
|
C2B
|
A:CLA604
|
4.3
|
21.7
|
1.0
|
C2D
|
A:CLA604
|
4.3
|
25.7
|
1.0
|
C2C
|
A:CLA604
|
4.3
|
21.8
|
1.0
|
C22
|
A:NEX623
|
4.3
|
30.8
|
1.0
|
C3C
|
A:CLA604
|
4.3
|
22.5
|
1.0
|
C3A
|
A:CLA604
|
4.5
|
23.6
|
1.0
|
O
|
A:HOH668
|
4.5
|
17.4
|
1.0
|
C2A
|
A:CLA604
|
4.5
|
25.2
|
1.0
|
CA
|
A:GLY78
|
4.6
|
24.0
|
1.0
|
O
|
A:GLY78
|
4.7
|
24.4
|
1.0
|
C25
|
A:NEX623
|
4.9
|
32.5
|
1.0
|
CBD
|
A:CLA604
|
5.0
|
25.5
|
1.0
|
|
Magnesium binding site 5 out
of 140 in 1rwt
Go back to
Magnesium Binding Sites List in 1rwt
Magnesium binding site 5 out
of 140 in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg605
b:25.1
occ:1.00
|
MG
|
A:CHL605
|
0.0
|
25.1
|
1.0
|
ND
|
A:CHL605
|
2.0
|
24.6
|
1.0
|
NB
|
A:CHL605
|
2.0
|
24.1
|
1.0
|
NC
|
A:CHL605
|
2.1
|
23.8
|
1.0
|
O
|
A:VAL119
|
2.2
|
23.9
|
1.0
|
NA
|
A:CHL605
|
2.2
|
26.4
|
1.0
|
C4D
|
A:CHL605
|
3.0
|
25.5
|
1.0
|
C4B
|
A:CHL605
|
3.0
|
23.7
|
1.0
|
C1B
|
A:CHL605
|
3.1
|
24.2
|
1.0
|
C1C
|
A:CHL605
|
3.1
|
23.6
|
1.0
|
C1D
|
A:CHL605
|
3.1
|
24.6
|
1.0
|
C4C
|
A:CHL605
|
3.1
|
23.7
|
1.0
|
C4A
|
A:CHL605
|
3.2
|
26.9
|
1.0
|
C1A
|
A:CHL605
|
3.2
|
27.4
|
1.0
|
C
|
A:VAL119
|
3.3
|
24.5
|
1.0
|
CHC
|
A:CHL605
|
3.4
|
24.0
|
1.0
|
CHD
|
A:CHL605
|
3.5
|
23.9
|
1.0
|
CHB
|
A:CHL605
|
3.5
|
25.0
|
1.0
|
CHA
|
A:CHL605
|
3.5
|
26.7
|
1.0
|
CA
|
A:VAL119
|
3.9
|
24.7
|
1.0
|
C6B
|
A:DGD632
|
4.1
|
56.4
|
1.0
|
C3D
|
A:CHL605
|
4.3
|
25.7
|
1.0
|
C3B
|
A:CHL605
|
4.3
|
22.5
|
1.0
|
C2B
|
A:CHL605
|
4.3
|
22.4
|
1.0
|
C2C
|
A:CHL605
|
4.3
|
23.5
|
1.0
|
C3C
|
A:CHL605
|
4.3
|
23.5
|
1.0
|
C2D
|
A:CHL605
|
4.3
|
25.0
|
1.0
|
C
|
A:HIS120
|
4.3
|
23.8
|
1.0
|
O
|
A:HIS120
|
4.4
|
22.0
|
1.0
|
C8B
|
A:DGD632
|
4.4
|
62.6
|
1.0
|
N
|
A:HIS120
|
4.4
|
23.9
|
1.0
|
C3A
|
A:CHL605
|
4.5
|
28.6
|
1.0
|
C2A
|
A:CHL605
|
4.5
|
31.0
|
1.0
|
C7B
|
A:DGD632
|
4.6
|
59.1
|
1.0
|
N
|
A:ALA121
|
4.6
|
23.7
|
1.0
|
CB
|
A:HIS120
|
4.7
|
22.9
|
1.0
|
CA
|
A:HIS120
|
4.7
|
23.5
|
1.0
|
CG1
|
A:VAL119
|
4.7
|
24.9
|
1.0
|
N
|
A:VAL119
|
4.8
|
26.5
|
1.0
|
|
Magnesium binding site 6 out
of 140 in 1rwt
Go back to
Magnesium Binding Sites List in 1rwt
Magnesium binding site 6 out
of 140 in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg606
b:23.5
occ:1.00
|
MG
|
A:CHL606
|
0.0
|
23.5
|
1.0
|
O
|
A:HOH644
|
2.0
|
21.0
|
1.0
|
ND
|
A:CHL606
|
2.0
|
24.7
|
1.0
|
NB
|
A:CHL606
|
2.0
|
23.4
|
1.0
|
NC
|
A:CHL606
|
2.1
|
21.4
|
1.0
|
NA
|
A:CHL606
|
2.2
|
26.2
|
1.0
|
C4D
|
A:CHL606
|
3.0
|
25.6
|
1.0
|
C4B
|
A:CHL606
|
3.0
|
21.9
|
1.0
|
C1B
|
A:CHL606
|
3.1
|
23.5
|
1.0
|
C1C
|
A:CHL606
|
3.1
|
20.4
|
1.0
|
C1D
|
A:CHL606
|
3.1
|
23.7
|
1.0
|
C4C
|
A:CHL606
|
3.1
|
20.9
|
1.0
|
C4A
|
A:CHL606
|
3.2
|
26.4
|
1.0
|
C1A
|
A:CHL606
|
3.2
|
28.3
|
1.0
|
CHC
|
A:CHL606
|
3.4
|
20.9
|
1.0
|
CHB
|
A:CHL606
|
3.5
|
24.8
|
1.0
|
CHD
|
A:CHL606
|
3.5
|
21.7
|
1.0
|
CHA
|
A:CHL606
|
3.5
|
27.4
|
1.0
|
OE1
|
A:GLN131
|
4.1
|
30.2
|
1.0
|
C38
|
A:NEX623
|
4.1
|
32.4
|
1.0
|
C3D
|
A:CHL606
|
4.3
|
25.3
|
1.0
|
C3B
|
A:CHL606
|
4.3
|
22.3
|
1.0
|
O
|
A:HOH664
|
4.3
|
20.1
|
1.0
|
C2B
|
A:CHL606
|
4.3
|
23.0
|
1.0
|
C2C
|
A:CHL606
|
4.3
|
20.5
|
1.0
|
C2D
|
A:CHL606
|
4.3
|
24.0
|
1.0
|
C3C
|
A:CHL606
|
4.3
|
20.5
|
1.0
|
CG2
|
A:ILE127
|
4.4
|
21.1
|
1.0
|
C3A
|
A:CHL606
|
4.5
|
28.4
|
1.0
|
C2A
|
A:CHL606
|
4.5
|
30.8
|
1.0
|
CD
|
A:GLN131
|
5.0
|
29.2
|
1.0
|
|
Magnesium binding site 7 out
of 140 in 1rwt
Go back to
Magnesium Binding Sites List in 1rwt
Magnesium binding site 7 out
of 140 in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg607
b:20.3
occ:1.00
|
MG
|
A:CHL607
|
0.0
|
20.3
|
1.0
|
O
|
A:HOH642
|
2.0
|
17.5
|
1.0
|
ND
|
A:CHL607
|
2.0
|
19.6
|
1.0
|
NB
|
A:CHL607
|
2.0
|
19.0
|
1.0
|
NC
|
A:CHL607
|
2.1
|
20.1
|
1.0
|
NA
|
A:CHL607
|
2.2
|
19.9
|
1.0
|
C4D
|
A:CHL607
|
3.0
|
20.0
|
1.0
|
C4B
|
A:CHL607
|
3.1
|
19.8
|
1.0
|
C1B
|
A:CHL607
|
3.1
|
19.2
|
1.0
|
C1D
|
A:CHL607
|
3.1
|
20.3
|
1.0
|
C1C
|
A:CHL607
|
3.1
|
20.9
|
1.0
|
C4C
|
A:CHL607
|
3.1
|
20.8
|
1.0
|
C4A
|
A:CHL607
|
3.2
|
20.4
|
1.0
|
C1A
|
A:CHL607
|
3.2
|
20.6
|
1.0
|
CHC
|
A:CHL607
|
3.4
|
20.3
|
1.0
|
CHB
|
A:CHL607
|
3.5
|
19.1
|
1.0
|
CHD
|
A:CHL607
|
3.5
|
20.4
|
1.0
|
CHA
|
A:CHL607
|
3.5
|
20.8
|
1.0
|
OMC
|
A:CHL606
|
3.8
|
21.7
|
1.0
|
C3D
|
A:CHL607
|
4.2
|
21.0
|
1.0
|
C2B
|
A:CHL607
|
4.3
|
19.5
|
1.0
|
C3B
|
A:CHL607
|
4.3
|
19.7
|
1.0
|
C2D
|
A:CHL607
|
4.3
|
20.8
|
1.0
|
C2C
|
A:CHL607
|
4.4
|
21.3
|
1.0
|
C3C
|
A:CHL607
|
4.4
|
21.4
|
1.0
|
CMC
|
A:CHL606
|
4.4
|
20.8
|
1.0
|
O
|
A:HOH671
|
4.5
|
15.1
|
1.0
|
C3A
|
A:CHL607
|
4.5
|
20.7
|
1.0
|
C2A
|
A:CHL607
|
4.5
|
20.4
|
1.0
|
C16
|
A:LUT621
|
5.0
|
19.4
|
1.0
|
|
Magnesium binding site 8 out
of 140 in 1rwt
Go back to
Magnesium Binding Sites List in 1rwt
Magnesium binding site 8 out
of 140 in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg608
b:34.6
occ:1.00
|
MG
|
A:CHL608
|
0.0
|
34.6
|
1.0
|
ND
|
A:CHL608
|
2.0
|
34.1
|
1.0
|
NB
|
A:CHL608
|
2.1
|
34.9
|
1.0
|
O
|
A:HOH636
|
2.1
|
33.9
|
1.0
|
NC
|
A:CHL608
|
2.1
|
34.3
|
1.0
|
NA
|
A:CHL608
|
2.2
|
34.8
|
1.0
|
C4D
|
A:CHL608
|
3.0
|
33.5
|
1.0
|
C1B
|
A:CHL608
|
3.1
|
34.9
|
1.0
|
C4B
|
A:CHL608
|
3.1
|
34.0
|
1.0
|
C1D
|
A:CHL608
|
3.1
|
34.0
|
1.0
|
C1C
|
A:CHL608
|
3.1
|
34.6
|
1.0
|
C4C
|
A:CHL608
|
3.1
|
35.1
|
1.0
|
C4A
|
A:CHL608
|
3.2
|
34.5
|
1.0
|
C1A
|
A:CHL608
|
3.2
|
34.7
|
1.0
|
CHC
|
A:CHL608
|
3.4
|
34.1
|
1.0
|
CHD
|
A:CHL608
|
3.5
|
34.7
|
1.0
|
CHB
|
A:CHL608
|
3.5
|
35.0
|
1.0
|
CHA
|
A:CHL608
|
3.5
|
33.5
|
1.0
|
CZ
|
A:PHE161
|
3.6
|
44.2
|
1.0
|
CE2
|
A:PHE161
|
3.9
|
45.0
|
1.0
|
C3D
|
A:CHL608
|
4.2
|
33.0
|
1.0
|
O
|
A:HOH641
|
4.3
|
16.8
|
1.0
|
C2B
|
A:CHL608
|
4.3
|
34.7
|
1.0
|
C2D
|
A:CHL608
|
4.3
|
33.2
|
1.0
|
C3B
|
A:CHL608
|
4.3
|
34.8
|
1.0
|
C2C
|
A:CHL608
|
4.3
|
35.8
|
1.0
|
C3C
|
A:CHL608
|
4.3
|
36.0
|
1.0
|
CE1
|
A:PHE161
|
4.4
|
44.1
|
1.0
|
O
|
A:VAL138
|
4.5
|
30.4
|
1.0
|
C3A
|
A:CHL608
|
4.5
|
35.5
|
1.0
|
C2A
|
A:CHL608
|
4.5
|
36.4
|
1.0
|
CB
|
A:VAL138
|
4.8
|
30.8
|
1.0
|
CD2
|
A:PHE161
|
5.0
|
45.2
|
1.0
|
CBD
|
A:CHL608
|
5.0
|
33.2
|
1.0
|
|
Magnesium binding site 9 out
of 140 in 1rwt
Go back to
Magnesium Binding Sites List in 1rwt
Magnesium binding site 9 out
of 140 in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg609
b:27.1
occ:1.00
|
MG
|
A:CHL609
|
0.0
|
27.1
|
1.0
|
ND
|
A:CHL609
|
2.0
|
26.1
|
1.0
|
NB
|
A:CHL609
|
2.1
|
26.5
|
1.0
|
NC
|
A:CHL609
|
2.1
|
26.1
|
1.0
|
NA
|
A:CHL609
|
2.2
|
27.0
|
1.0
|
OE1
|
A:GLU139
|
2.2
|
29.5
|
1.0
|
C4D
|
A:CHL609
|
3.0
|
26.0
|
1.0
|
C4B
|
A:CHL609
|
3.1
|
26.2
|
1.0
|
C1B
|
A:CHL609
|
3.1
|
26.2
|
1.0
|
C1C
|
A:CHL609
|
3.1
|
26.2
|
1.0
|
C1D
|
A:CHL609
|
3.1
|
25.6
|
1.0
|
C4C
|
A:CHL609
|
3.1
|
25.7
|
1.0
|
C4A
|
A:CHL609
|
3.2
|
26.9
|
1.0
|
C1A
|
A:CHL609
|
3.2
|
26.8
|
1.0
|
CD
|
A:GLU139
|
3.3
|
32.7
|
1.0
|
CHC
|
A:CHL609
|
3.4
|
26.4
|
1.0
|
CHB
|
A:CHL609
|
3.5
|
26.3
|
1.0
|
CHD
|
A:CHL609
|
3.5
|
25.0
|
1.0
|
CHA
|
A:CHL609
|
3.5
|
26.8
|
1.0
|
CG
|
A:GLU139
|
3.9
|
33.1
|
1.0
|
NH2
|
A:ARG142
|
4.2
|
35.5
|
1.0
|
C3D
|
A:CHL609
|
4.2
|
26.4
|
1.0
|
C2B
|
A:CHL609
|
4.3
|
26.3
|
1.0
|
C3B
|
A:CHL609
|
4.3
|
26.5
|
1.0
|
C2D
|
A:CHL609
|
4.3
|
25.9
|
1.0
|
C2C
|
A:CHL609
|
4.3
|
25.8
|
1.0
|
C3C
|
A:CHL609
|
4.3
|
25.4
|
1.0
|
OE2
|
A:GLU139
|
4.4
|
33.5
|
1.0
|
C3A
|
A:CHL609
|
4.5
|
27.1
|
1.0
|
C2A
|
A:CHL609
|
4.5
|
27.4
|
1.0
|
CMD
|
A:CLA603
|
4.8
|
24.1
|
1.0
|
CB
|
A:GLU139
|
4.8
|
32.6
|
1.0
|
CBD
|
A:CHL609
|
5.0
|
28.1
|
1.0
|
|
Magnesium binding site 10 out
of 140 in 1rwt
Go back to
Magnesium Binding Sites List in 1rwt
Magnesium binding site 10 out
of 140 in the Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg610
b:34.3
occ:1.00
|
MG
|
A:CLA610
|
0.0
|
34.3
|
1.0
|
ND
|
A:CLA610
|
2.0
|
35.1
|
1.0
|
NB
|
A:CLA610
|
2.0
|
34.2
|
1.0
|
NC
|
A:CLA610
|
2.1
|
33.0
|
1.0
|
NA
|
A:CLA610
|
2.2
|
35.4
|
1.0
|
OE1
|
A:GLU180
|
2.2
|
32.1
|
1.0
|
C4D
|
A:CLA610
|
3.0
|
35.3
|
1.0
|
C1B
|
A:CLA610
|
3.0
|
35.1
|
1.0
|
C4B
|
A:CLA610
|
3.1
|
34.3
|
1.0
|
C1C
|
A:CLA610
|
3.1
|
32.8
|
1.0
|
C1D
|
A:CLA610
|
3.1
|
35.1
|
1.0
|
C4C
|
A:CLA610
|
3.1
|
32.7
|
1.0
|
C4A
|
A:CLA610
|
3.1
|
35.5
|
1.0
|
C1A
|
A:CLA610
|
3.2
|
35.9
|
1.0
|
CD
|
A:GLU180
|
3.2
|
32.1
|
1.0
|
CHC
|
A:CLA610
|
3.4
|
33.8
|
1.0
|
CHB
|
A:CLA610
|
3.4
|
35.0
|
1.0
|
CHD
|
A:CLA610
|
3.5
|
33.7
|
1.0
|
CHA
|
A:CLA610
|
3.5
|
36.1
|
1.0
|
CG
|
A:GLU180
|
3.8
|
31.8
|
1.0
|
OE2
|
A:GLU180
|
4.1
|
29.8
|
1.0
|
NE
|
A:ARG70
|
4.2
|
28.9
|
1.0
|
C38
|
A:LUT620
|
4.2
|
37.1
|
1.0
|
C3D
|
A:CLA610
|
4.2
|
36.0
|
1.0
|
C2B
|
A:CLA610
|
4.3
|
35.6
|
1.0
|
C3B
|
A:CLA610
|
4.3
|
35.1
|
1.0
|
C2C
|
A:CLA610
|
4.3
|
31.7
|
1.0
|
C2D
|
A:CLA610
|
4.3
|
35.4
|
1.0
|
C3C
|
A:CLA610
|
4.3
|
31.4
|
1.0
|
NH2
|
A:ARG70
|
4.4
|
33.4
|
1.0
|
C3A
|
A:CLA610
|
4.5
|
36.2
|
1.0
|
C2A
|
A:CLA610
|
4.5
|
36.3
|
1.0
|
CZ
|
A:ARG70
|
4.7
|
31.2
|
1.0
|
CB
|
A:GLU180
|
4.8
|
32.5
|
1.0
|
CBD
|
A:CLA610
|
5.0
|
36.9
|
1.0
|
|
Reference:
Z.Liu,
H.Yan,
K.Wang,
T.Kuang,
J.Zhang,
L.Gui,
X.An,
W.Chang.
Crystal Structure of Spinach Major Light-Harvesting Complex at 2.72 A Resolution Nature V. 428 287 2004.
ISSN: ISSN 0028-0836
PubMed: 15029188
DOI: 10.1038/NATURE02373
Page generated: Tue Aug 13 13:09:00 2024
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