Magnesium in PDB 1ryp: Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Enzymatic activity of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
All present enzymatic activity of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution:
3.4.99.46;
Protein crystallography data
The structure of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution, PDB code: 1ryp
was solved by
M.Groll,
L.Ditzel,
J.Loewe,
D.Stock,
M.Bochtler,
H.D.Bartunik,
R.Huber,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
1.90
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
135.490,
300.700,
144.420,
90.00,
112.89,
90.00
|
R / Rfree (%)
|
28.6 /
33
|
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
(pdb code 1ryp). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 20 binding sites of Magnesium where determined in the
Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution, PDB code: 1ryp:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 20 in 1ryp
Go back to
Magnesium Binding Sites List in 1ryp
Magnesium binding site 1 out
of 20 in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1
b:29.6
occ:1.00
|
O
|
A:MET134
|
2.0
|
27.2
|
1.0
|
O
|
A:TYR128
|
2.2
|
24.3
|
1.0
|
O
|
A:ARG131
|
2.4
|
24.3
|
1.0
|
O
|
A:HOH260
|
2.4
|
25.3
|
1.0
|
OG1
|
A:THR17
|
2.6
|
29.8
|
1.0
|
C
|
A:MET134
|
3.2
|
28.0
|
1.0
|
C
|
A:TYR128
|
3.3
|
23.9
|
1.0
|
C
|
A:ARG131
|
3.4
|
25.5
|
1.0
|
CG2
|
A:THR17
|
3.4
|
23.4
|
1.0
|
CB
|
A:THR17
|
3.6
|
22.3
|
1.0
|
CA
|
A:ALA132
|
3.9
|
23.8
|
1.0
|
C
|
A:ALA132
|
4.0
|
27.1
|
1.0
|
N
|
A:MET134
|
4.0
|
30.0
|
1.0
|
N
|
A:ALA132
|
4.0
|
28.0
|
1.0
|
O
|
A:ALA132
|
4.1
|
30.4
|
1.0
|
CA
|
A:TYR128
|
4.1
|
24.0
|
1.0
|
CA
|
A:MET134
|
4.1
|
32.7
|
1.0
|
N
|
A:ARG135
|
4.2
|
29.0
|
1.0
|
N
|
A:THR129
|
4.3
|
22.4
|
1.0
|
CA
|
A:ARG135
|
4.4
|
26.6
|
1.0
|
N
|
A:THR17
|
4.4
|
27.9
|
1.0
|
CB
|
A:MET134
|
4.4
|
38.2
|
1.0
|
N
|
A:ARG131
|
4.5
|
25.6
|
1.0
|
CA
|
A:ARG131
|
4.5
|
24.3
|
1.0
|
CD
|
A:PRO136
|
4.6
|
17.6
|
1.0
|
CA
|
A:THR17
|
4.6
|
22.5
|
1.0
|
N
|
A:TYR133
|
4.6
|
31.4
|
1.0
|
C
|
A:THR129
|
4.7
|
27.3
|
1.0
|
CA
|
A:THR129
|
4.7
|
24.9
|
1.0
|
CB
|
A:TYR128
|
4.7
|
21.9
|
1.0
|
O
|
A:HOH325
|
4.8
|
35.4
|
1.0
|
O
|
A:HOH297
|
4.9
|
34.4
|
1.0
|
C
|
A:TYR133
|
4.9
|
25.8
|
1.0
|
C
|
A:ARG135
|
4.9
|
26.1
|
1.0
|
N
|
A:GLN130
|
4.9
|
27.3
|
1.0
|
O
|
A:THR129
|
5.0
|
27.8
|
1.0
|
|
Magnesium binding site 2 out
of 20 in 1ryp
Go back to
Magnesium Binding Sites List in 1ryp
Magnesium binding site 2 out
of 20 in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg253
b:55.1
occ:1.00
|
O
|
A:HOH313
|
2.4
|
41.8
|
1.0
|
O
|
G:HOH249
|
2.6
|
40.6
|
1.0
|
O
|
A:ALA132
|
2.9
|
30.4
|
1.0
|
OD1
|
G:ASN126
|
3.1
|
40.0
|
1.0
|
OH
|
B:TYR5
|
3.2
|
33.6
|
1.0
|
O
|
A:TYR133
|
3.5
|
28.2
|
1.0
|
CE1
|
B:TYR5
|
3.6
|
29.6
|
1.0
|
CA
|
A:TYR133
|
3.7
|
30.6
|
1.0
|
O
|
G:HOH310
|
3.7
|
36.4
|
1.0
|
CG
|
G:ASN126
|
3.8
|
33.1
|
1.0
|
CZ
|
B:TYR5
|
3.8
|
28.3
|
1.0
|
OG
|
G:SER12
|
3.8
|
27.1
|
1.0
|
C
|
A:TYR133
|
3.8
|
25.8
|
1.0
|
C
|
A:ALA132
|
3.9
|
27.1
|
1.0
|
N
|
A:TYR133
|
4.3
|
31.4
|
1.0
|
N
|
G:ASN126
|
4.3
|
24.5
|
1.0
|
CB
|
G:ASN126
|
4.4
|
32.0
|
1.0
|
O
|
A:HOH297
|
4.4
|
34.4
|
1.0
|
ND2
|
G:ASN126
|
4.6
|
41.7
|
1.0
|
CG2
|
A:ILE16
|
4.6
|
23.0
|
1.0
|
N
|
A:MET134
|
4.8
|
30.0
|
1.0
|
CD1
|
B:TYR5
|
4.8
|
31.0
|
1.0
|
CB
|
A:TYR133
|
4.8
|
31.4
|
1.0
|
O
|
A:HOH260
|
4.8
|
25.3
|
1.0
|
CE2
|
B:TYR5
|
5.0
|
27.3
|
1.0
|
|
Magnesium binding site 3 out
of 20 in 1ryp
Go back to
Magnesium Binding Sites List in 1ryp
Magnesium binding site 3 out
of 20 in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg2
b:34.2
occ:1.00
|
O
|
M:HOH220
|
2.1
|
51.9
|
1.0
|
O
|
M:HOH226
|
2.1
|
30.9
|
1.0
|
OE1
|
E:GLU105
|
2.3
|
28.9
|
1.0
|
OG
|
M:SER76
|
2.4
|
32.1
|
1.0
|
O
|
M:HOH227
|
2.5
|
43.0
|
1.0
|
OG
|
M:SER79
|
2.6
|
27.6
|
1.0
|
CD
|
E:GLU105
|
3.4
|
18.2
|
1.0
|
CB
|
M:SER76
|
3.6
|
29.1
|
1.0
|
CB
|
M:SER79
|
3.6
|
24.5
|
1.0
|
CB
|
E:GLU105
|
3.8
|
23.9
|
1.0
|
CG
|
E:GLU105
|
4.2
|
21.1
|
1.0
|
N
|
M:SER76
|
4.2
|
24.9
|
1.0
|
OD1
|
M:ASN78
|
4.2
|
25.4
|
1.0
|
OE2
|
E:GLU105
|
4.3
|
23.5
|
1.0
|
OE2
|
M:GLU107
|
4.4
|
58.8
|
1.0
|
OH
|
M:TYR66
|
4.4
|
28.6
|
1.0
|
CA
|
M:SER76
|
4.5
|
27.1
|
1.0
|
O
|
M:HOH294
|
4.5
|
45.8
|
1.0
|
ND2
|
M:ASN78
|
4.6
|
24.9
|
1.0
|
CG
|
M:ASN78
|
4.8
|
27.1
|
1.0
|
CA
|
M:SER79
|
4.8
|
24.2
|
1.0
|
O
|
E:TYR103
|
4.8
|
25.0
|
1.0
|
CD
|
M:GLU107
|
4.8
|
53.6
|
1.0
|
O
|
E:HOH320
|
4.8
|
42.1
|
1.0
|
CE
|
M:LYS73
|
4.8
|
22.1
|
1.0
|
OE1
|
M:GLU107
|
4.9
|
58.4
|
1.0
|
N
|
M:SER79
|
4.9
|
27.4
|
1.0
|
NZ
|
M:LYS73
|
4.9
|
25.7
|
1.0
|
O
|
M:LYS74
|
4.9
|
29.2
|
1.0
|
|
Magnesium binding site 4 out
of 20 in 1ryp
Go back to
Magnesium Binding Sites List in 1ryp
Magnesium binding site 4 out
of 20 in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg248
b:78.9
occ:1.00
|
O
|
G:HOH291
|
3.7
|
33.2
|
1.0
|
NZ
|
G:LYS172
|
3.9
|
52.9
|
1.0
|
OE2
|
G:GLU151
|
4.2
|
43.2
|
1.0
|
CD
|
G:GLU151
|
4.5
|
35.6
|
1.0
|
O
|
G:HOH336
|
4.6
|
47.9
|
1.0
|
OE1
|
G:GLU151
|
4.7
|
40.2
|
1.0
|
|
Magnesium binding site 5 out
of 20 in 1ryp
Go back to
Magnesium Binding Sites List in 1ryp
Magnesium binding site 5 out
of 20 in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg197
b:27.1
occ:1.00
|
O
|
H:ILE163
|
2.4
|
22.1
|
1.0
|
O
|
H:SER169
|
2.4
|
24.5
|
1.0
|
O
|
H:ASP166
|
2.7
|
29.0
|
1.0
|
C
|
H:ILE163
|
3.5
|
23.0
|
1.0
|
C
|
H:SER169
|
3.6
|
22.2
|
1.0
|
CD1
|
2:LEU26
|
3.6
|
21.1
|
1.0
|
O
|
2:HOH301
|
3.7
|
37.6
|
1.0
|
C
|
H:ASP166
|
3.8
|
17.5
|
1.0
|
NH1
|
H:ARG19
|
3.8
|
27.4
|
1.0
|
CG2
|
H:ILE163
|
3.8
|
17.5
|
1.0
|
CA
|
H:GLY167
|
4.1
|
15.4
|
1.0
|
CA
|
H:ILE163
|
4.2
|
17.1
|
1.0
|
CA
|
H:GLY170
|
4.3
|
17.1
|
1.0
|
N
|
H:GLY167
|
4.4
|
17.6
|
1.0
|
CZ
|
H:ARG19
|
4.4
|
25.2
|
1.0
|
N
|
H:GLY170
|
4.4
|
20.6
|
1.0
|
C
|
H:GLY167
|
4.4
|
18.7
|
1.0
|
O
|
H:GLY167
|
4.4
|
25.3
|
1.0
|
O
|
H:LYS164
|
4.5
|
27.8
|
1.0
|
N
|
H:SER169
|
4.5
|
25.2
|
1.0
|
CA
|
H:SER169
|
4.6
|
20.2
|
1.0
|
N
|
H:LYS164
|
4.6
|
23.9
|
1.0
|
CB
|
H:ILE163
|
4.7
|
15.9
|
1.0
|
NH2
|
H:ARG19
|
4.7
|
21.8
|
1.0
|
C
|
H:LYS164
|
4.7
|
23.5
|
1.0
|
N
|
H:ASP166
|
4.8
|
22.4
|
1.0
|
O
|
H:HOH321
|
4.8
|
38.5
|
1.0
|
CA
|
H:ASP166
|
4.8
|
18.7
|
1.0
|
O
|
2:HOH307
|
4.8
|
45.5
|
1.0
|
CB
|
H:SER169
|
4.8
|
20.9
|
1.0
|
CG
|
2:LEU26
|
4.9
|
19.8
|
1.0
|
CA
|
H:LYS164
|
4.9
|
23.0
|
1.0
|
|
Magnesium binding site 6 out
of 20 in 1ryp
Go back to
Magnesium Binding Sites List in 1ryp
Magnesium binding site 6 out
of 20 in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg223
b:24.9
occ:1.00
|
O
|
I:ASP166
|
2.0
|
26.7
|
1.0
|
OXT
|
1:ASP213
|
2.1
|
34.7
|
1.0
|
O
|
I:ILE163
|
2.2
|
31.6
|
1.0
|
O
|
1:HOH324
|
2.2
|
30.1
|
1.0
|
O
|
I:SER169
|
2.4
|
25.8
|
1.0
|
C
|
1:ASP213
|
3.0
|
36.0
|
1.0
|
C
|
I:ASP166
|
3.2
|
21.2
|
1.0
|
C
|
I:ILE163
|
3.3
|
25.0
|
1.0
|
C
|
I:SER169
|
3.5
|
20.8
|
1.0
|
CA
|
1:ASP213
|
3.5
|
33.0
|
1.0
|
NH1
|
I:ARG19
|
3.7
|
27.7
|
1.0
|
O
|
I:GLY162
|
3.8
|
24.2
|
1.0
|
CA
|
I:LEU167
|
3.9
|
21.9
|
1.0
|
N
|
I:ASP166
|
3.9
|
27.6
|
1.0
|
O
|
1:ASP213
|
3.9
|
43.1
|
1.0
|
N
|
I:LEU167
|
3.9
|
21.4
|
1.0
|
CB
|
1:ASP213
|
4.0
|
26.9
|
1.0
|
CA
|
I:ILE163
|
4.0
|
21.3
|
1.0
|
CA
|
I:ASP166
|
4.2
|
22.5
|
1.0
|
N
|
I:SER169
|
4.2
|
23.9
|
1.0
|
N
|
I:TRP164
|
4.2
|
25.9
|
1.0
|
C
|
I:TRP164
|
4.3
|
25.2
|
1.0
|
C
|
I:LEU167
|
4.3
|
22.5
|
1.0
|
CA
|
I:GLY170
|
4.3
|
23.7
|
1.0
|
O
|
I:TRP164
|
4.3
|
31.4
|
1.0
|
N
|
I:GLY170
|
4.3
|
22.3
|
1.0
|
O
|
1:HOH245
|
4.3
|
56.9
|
1.0
|
CA
|
I:SER169
|
4.4
|
17.1
|
1.0
|
CZ
|
I:ARG19
|
4.4
|
21.9
|
1.0
|
CA
|
I:TRP164
|
4.5
|
22.8
|
1.0
|
O
|
I:LEU167
|
4.6
|
24.5
|
1.0
|
NH2
|
I:ARG19
|
4.6
|
27.2
|
1.0
|
CB
|
I:SER169
|
4.7
|
15.5
|
1.0
|
N
|
I:ASN165
|
4.7
|
23.7
|
1.0
|
C
|
I:GLY162
|
4.8
|
19.9
|
1.0
|
C
|
I:ASN165
|
4.8
|
27.8
|
1.0
|
CB
|
I:ASP166
|
4.9
|
25.6
|
1.0
|
N
|
1:ASP213
|
4.9
|
30.4
|
1.0
|
N
|
I:GLY168
|
4.9
|
24.7
|
1.0
|
O
|
1:ARG212
|
4.9
|
27.2
|
1.0
|
N
|
I:ILE163
|
4.9
|
20.9
|
1.0
|
CD2
|
I:LEU167
|
4.9
|
21.3
|
1.0
|
CG
|
1:ASP213
|
5.0
|
29.6
|
1.0
|
|
Magnesium binding site 7 out
of 20 in 1ryp
Go back to
Magnesium Binding Sites List in 1ryp
Magnesium binding site 7 out
of 20 in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg197
b:52.4
occ:1.00
|
O
|
J:HOH266
|
2.2
|
34.2
|
1.0
|
OG
|
J:SER134
|
2.5
|
28.0
|
1.0
|
O
|
J:HOH225
|
2.5
|
36.6
|
1.0
|
O
|
J:GLY131
|
3.0
|
28.1
|
1.0
|
O
|
J:HOH226
|
3.6
|
38.8
|
1.0
|
CB
|
J:SER134
|
3.6
|
21.2
|
1.0
|
O
|
J:HOH293
|
3.8
|
56.3
|
1.0
|
C
|
J:GLY131
|
4.2
|
21.7
|
1.0
|
O
|
J:HOH269
|
4.2
|
41.8
|
1.0
|
O
|
J:HOH284
|
4.2
|
42.6
|
1.0
|
O
|
J:HOH223
|
4.3
|
36.5
|
1.0
|
N
|
J:SER134
|
4.7
|
21.4
|
1.0
|
CA
|
J:SER134
|
4.8
|
18.5
|
1.0
|
N
|
J:GLY131
|
4.8
|
20.6
|
1.0
|
CA
|
J:THR132
|
4.9
|
23.0
|
1.0
|
N
|
J:THR132
|
5.0
|
24.1
|
1.0
|
|
Magnesium binding site 8 out
of 20 in 1ryp
Go back to
Magnesium Binding Sites List in 1ryp
Magnesium binding site 8 out
of 20 in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg198
b:32.5
occ:1.00
|
O
|
J:HOH206
|
2.0
|
35.5
|
1.0
|
O
|
J:ALA166
|
2.2
|
27.4
|
1.0
|
O
|
J:ASP169
|
2.3
|
23.9
|
1.0
|
O
|
J:SER172
|
2.4
|
30.8
|
1.0
|
O
|
J:HOH204
|
2.5
|
29.2
|
1.0
|
C
|
J:ALA166
|
3.3
|
22.0
|
1.0
|
C
|
J:SER172
|
3.4
|
24.0
|
1.0
|
C
|
J:ASP169
|
3.4
|
20.4
|
1.0
|
O
|
J:HOH203
|
3.8
|
43.4
|
1.0
|
CA
|
J:ASP167
|
3.9
|
22.1
|
1.0
|
N
|
J:ASP167
|
4.0
|
28.1
|
1.0
|
N
|
J:ASP169
|
4.1
|
24.0
|
1.0
|
N
|
J:SER172
|
4.1
|
26.1
|
1.0
|
C
|
J:ASP167
|
4.2
|
22.4
|
1.0
|
CA
|
J:SER172
|
4.2
|
23.8
|
1.0
|
CA
|
J:ASP169
|
4.3
|
21.3
|
1.0
|
N
|
J:GLY173
|
4.3
|
23.7
|
1.0
|
CA
|
J:GLY173
|
4.4
|
24.4
|
1.0
|
CA
|
J:ALA166
|
4.4
|
20.2
|
1.0
|
O
|
J:HOH255
|
4.4
|
25.0
|
1.0
|
N
|
J:ALA170
|
4.4
|
22.7
|
1.0
|
OXT
|
J:ASP196
|
4.5
|
31.3
|
1.0
|
O
|
J:ALA170
|
4.5
|
28.2
|
1.0
|
CA
|
J:ALA170
|
4.5
|
24.3
|
1.0
|
C
|
J:ALA170
|
4.5
|
27.0
|
1.0
|
O
|
J:ASP167
|
4.6
|
28.1
|
1.0
|
CB
|
J:SER172
|
4.6
|
24.4
|
1.0
|
CB
|
J:ALA166
|
4.6
|
23.6
|
1.0
|
OD1
|
J:ASP167
|
4.6
|
30.9
|
1.0
|
O
|
J:HOH258
|
4.6
|
44.3
|
1.0
|
CB
|
J:ASP169
|
4.7
|
22.4
|
1.0
|
N
|
J:ARG168
|
4.7
|
25.1
|
1.0
|
|
Magnesium binding site 9 out
of 20 in 1ryp
Go back to
Magnesium Binding Sites List in 1ryp
Magnesium binding site 9 out
of 20 in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg213
b:29.4
occ:1.00
|
O
|
X:ASP196
|
2.1
|
36.1
|
1.0
|
O
|
L:ALA165
|
2.2
|
28.7
|
1.0
|
O
|
L:ASP168
|
2.3
|
30.6
|
1.0
|
O
|
L:HOH280
|
2.5
|
27.8
|
1.0
|
O
|
L:SER171
|
2.6
|
27.9
|
1.0
|
C
|
X:ASP196
|
3.0
|
34.8
|
1.0
|
C
|
L:ALA165
|
3.3
|
24.8
|
1.0
|
C
|
L:ASP168
|
3.3
|
23.5
|
1.0
|
CA
|
X:ASP196
|
3.4
|
30.2
|
1.0
|
NH1
|
L:ARG19
|
3.7
|
30.8
|
1.0
|
CB
|
X:ASP196
|
3.8
|
23.9
|
1.0
|
C
|
L:SER171
|
3.8
|
25.5
|
1.0
|
CA
|
L:ALA169
|
3.8
|
20.2
|
1.0
|
N
|
L:ALA169
|
4.0
|
22.2
|
1.0
|
O
|
L:HIS166
|
4.0
|
29.5
|
1.0
|
CA
|
L:ALA165
|
4.0
|
23.3
|
1.0
|
C
|
L:ALA169
|
4.0
|
20.6
|
1.0
|
OXT
|
X:ASP196
|
4.1
|
34.5
|
1.0
|
O
|
L:ALA169
|
4.1
|
23.7
|
1.0
|
N
|
L:SER171
|
4.3
|
25.6
|
1.0
|
C
|
L:HIS166
|
4.3
|
23.0
|
1.0
|
N
|
L:ASP168
|
4.3
|
24.6
|
1.0
|
N
|
L:HIS166
|
4.4
|
23.6
|
1.0
|
O
|
X:HOH284
|
4.4
|
39.6
|
1.0
|
CA
|
L:ASP168
|
4.4
|
20.9
|
1.0
|
O
|
L:ALA164
|
4.6
|
28.4
|
1.0
|
CZ
|
L:ARG19
|
4.6
|
29.8
|
1.0
|
CA
|
L:SER171
|
4.6
|
23.8
|
1.0
|
CA
|
L:HIS166
|
4.6
|
22.0
|
1.0
|
N
|
L:TYR170
|
4.7
|
25.7
|
1.0
|
N
|
L:GLY172
|
4.7
|
27.2
|
1.0
|
CG
|
X:ASP196
|
4.7
|
24.4
|
1.0
|
CA
|
L:GLY172
|
4.8
|
24.8
|
1.0
|
CB
|
L:ALA165
|
4.8
|
24.3
|
1.0
|
N
|
X:ASP196
|
4.8
|
25.7
|
1.0
|
C
|
L:ARG167
|
4.9
|
25.3
|
1.0
|
NH2
|
L:ARG19
|
4.9
|
29.4
|
1.0
|
N
|
L:ARG167
|
4.9
|
23.1
|
1.0
|
O
|
X:HOH231
|
5.0
|
28.8
|
1.0
|
|
Magnesium binding site 10 out
of 20 in 1ryp
Go back to
Magnesium Binding Sites List in 1ryp
Magnesium binding site 10 out
of 20 in the Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of the 20S Proteasome From Yeast at 2.4 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg214
b:33.8
occ:1.00
|
O
|
M:HOH303
|
1.7
|
54.0
|
1.0
|
O
|
M:HOH242
|
2.2
|
30.9
|
1.0
|
O
|
M:VAL189
|
2.2
|
30.8
|
1.0
|
O
|
M:HIS186
|
2.3
|
22.0
|
1.0
|
O
|
M:THR183
|
2.6
|
31.8
|
1.0
|
O
|
M:HOH305
|
3.4
|
41.3
|
1.0
|
C
|
M:VAL189
|
3.4
|
26.2
|
1.0
|
C
|
M:HIS186
|
3.4
|
19.4
|
1.0
|
C
|
M:THR183
|
3.4
|
28.3
|
1.0
|
CG2
|
M:THR183
|
3.6
|
26.2
|
1.0
|
CA
|
M:THR183
|
3.6
|
27.1
|
1.0
|
O
|
M:HOH240
|
3.8
|
36.0
|
1.0
|
CA
|
M:ILE187
|
3.8
|
21.4
|
1.0
|
NH1
|
M:ARG19
|
3.9
|
26.9
|
1.0
|
C
|
M:ILE187
|
4.0
|
20.9
|
1.0
|
N
|
M:VAL189
|
4.0
|
27.2
|
1.0
|
O
|
M:ILE187
|
4.1
|
23.9
|
1.0
|
N
|
M:ILE187
|
4.1
|
22.9
|
1.0
|
CA
|
M:VAL189
|
4.2
|
23.6
|
1.0
|
CB
|
M:THR183
|
4.2
|
26.3
|
1.0
|
O
|
M:ASP213
|
4.3
|
45.3
|
1.0
|
N
|
M:GLY190
|
4.4
|
22.8
|
1.0
|
N
|
M:HIS186
|
4.5
|
23.9
|
1.0
|
CA
|
M:HIS186
|
4.6
|
19.8
|
1.0
|
CA
|
M:GLY190
|
4.6
|
17.4
|
1.0
|
N
|
M:GLN188
|
4.6
|
25.8
|
1.0
|
CB
|
M:VAL189
|
4.6
|
23.0
|
1.0
|
O
|
M:ALA182
|
4.6
|
35.1
|
1.0
|
N
|
M:GLU184
|
4.7
|
30.4
|
1.0
|
OD1
|
M:ASP213
|
4.8
|
39.6
|
1.0
|
NH2
|
W:ARG19
|
4.8
|
21.5
|
1.0
|
N
|
M:THR183
|
4.9
|
28.5
|
1.0
|
OG1
|
M:THR183
|
4.9
|
28.9
|
1.0
|
C
|
M:GLN188
|
5.0
|
23.8
|
1.0
|
CZ
|
M:ARG19
|
5.0
|
24.7
|
1.0
|
|
Reference:
M.Groll,
L.Ditzel,
J.Lowe,
D.Stock,
M.Bochtler,
H.D.Bartunik,
R.Huber.
Structure of 20S Proteasome From Yeast at 2.4 A Resolution. Nature V. 386 463 1997.
ISSN: ISSN 0028-0836
PubMed: 9087403
DOI: 10.1038/386463A0
Page generated: Tue Aug 13 13:10:00 2024
|