Magnesium in PDB 1s0m: Crystal Structure of A Benzo[A]Pyrene Diol Epoxide Adduct in A Ternary Complex with A Dna Polymerase

Enzymatic activity of Crystal Structure of A Benzo[A]Pyrene Diol Epoxide Adduct in A Ternary Complex with A Dna Polymerase

All present enzymatic activity of Crystal Structure of A Benzo[A]Pyrene Diol Epoxide Adduct in A Ternary Complex with A Dna Polymerase:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of A Benzo[A]Pyrene Diol Epoxide Adduct in A Ternary Complex with A Dna Polymerase, PDB code: 1s0m was solved by H.Ling, J.M.Sayer, F.Boudsocq, B.S.Plosky, R.Woodgate, W.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	25.60 / 2.70
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	100.029, 103.545, 106.127, 90.00, 90.00, 90.00
*R / R_free (%)*	20.7 / 24.6

Other elements in 1s0m:

The structure of Crystal Structure of A Benzo[A]Pyrene Diol Epoxide Adduct in A Ternary Complex with A Dna Polymerase also contains other interesting chemical elements:

Calcium

(Ca)

7 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Benzo[A]Pyrene Diol Epoxide Adduct in A Ternary Complex with A Dna Polymerase (pdb code 1s0m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Benzo[A]Pyrene Diol Epoxide Adduct in A Ternary Complex with A Dna Polymerase, PDB code: 1s0m:

Magnesium binding site 1 out of 1 in 1s0m

Go back to

Magnesium Binding Sites List in 1s0m

Magnesium binding site 1 out of 1 in the Crystal Structure of A Benzo[A]Pyrene Diol Epoxide Adduct in A Ternary Complex with A Dna Polymerase

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Benzo[A]Pyrene Diol Epoxide Adduct in A Ternary Complex with A Dna Polymerase within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg401 b:52.7 occ:1.00	O	A:HOH917	2.4	37.0	1.0
	O1G	A:DTP803	2.4	91.1	1.0
	O3G	A:DTP803	2.9	91.2	1.0
	PG	A:DTP803	2.9	92.1	1.0
	OE1	A:GLU106	3.0	44.9	1.0
	OD1	A:ASP105	3.1	40.0	1.0
	CD	A:GLU106	3.1	41.8	1.0
	OD1	A:ASP7	3.2	36.1	1.0
	O2G	A:DTP803	3.2	91.4	1.0
	O	A:HOH877	3.4	68.1	1.0
	CG	A:GLU106	3.5	38.9	1.0
	O	A:HOH804	3.6	26.5	1.0
	OD2	A:ASP105	3.7	41.8	1.0
	OE2	A:GLU106	3.7	42.8	1.0
	CG	A:ASP105	3.8	38.9	1.0
	CA	A:CA402	4.2	36.8	1.0
	CG	A:ASP7	4.2	32.2	1.0
	O3B	A:DTP803	4.2	90.8	1.0
	OG	A:SER103	4.4	36.6	1.0
	OD2	A:ASP7	4.6	36.5	1.0
	O1A	A:DTP803	4.8	85.7	1.0
	CB	A:GLU106	4.9	35.6	1.0
	NZ	A:LYS152	4.9	37.0	1.0
	O3'	C:DT1813	5.0	44.4	1.0

Reference:

H.Ling, J.M.Sayer, B.S.Plosky, H.Yagi, F.Boudsocq, R.Woodgate, D.M.Jerina, W.Yang. Crystal Structure of A Benzo[A]Pyrene Diol Epoxide Adduct in A Ternary Complex with A Dna Polymerase. Proc.Natl.Acad.Sci.Usa V. 101 2265 2004.
ISSN: ISSN 0027-8424
PubMed: 14982998
DOI: 10.1073/PNAS.0308332100

Page generated: Tue Aug 13 13:11:30 2024

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