Magnesium in PDB 1s0o: Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift

All present enzymatic activity of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift:
2.7.7.7;

The structure of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift, PDB code: 1s0o was solved by H.Ling, F.Boudsocq, R.Woodgate, W.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	98.301, 103.046, 105.912, 90.00, 90.00, 90.00
R / Rfree (%)	22.9 / 26.9

The structure of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift also contains other interesting chemical elements:

Calcium

(Ca)

6 atoms

The binding sites of Magnesium atom in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift (pdb code 1s0o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift, PDB code: 1s0o:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg407 b:45.6 occ:1.00 OD1 A:ASP294 2.2 42.3 1.0 OD2 A:ASP294 2.3 41.1 1.0 O A:HOH891 2.3 56.1 1.0 CG A:ASP294 2.6 47.6 1.0 O C:HOH373 3.3 55.0 1.0 CB A:ASP294 4.0 47.6 1.0 OP2 C:DA1810 4.2 52.7 1.0 O A:ILE295 4.2 47.1 1.0 NH2 A:ARG328 4.3 54.2 1.0 N A:ILE295 4.5 50.7 1.0 OP1 C:DA1810 4.6 52.4 1.0 P C:DA1810 4.8 49.2 1.0 NH1 A:ARG328 4.8 56.2 1.0 CA A:ASP294 4.9 53.0 1.0 C3' C:DG1809 5.0 50.4 1.0

Magnesium binding site 2 out of 2 in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg408 b:53.2 occ:1.00 O B:HOH932 1.9 57.1 1.0 OD2 B:ASP294 2.2 40.0 1.0 O B:HOH880 2.8 59.6 1.0 OD1 B:ASP294 2.9 38.6 1.0 CG B:ASP294 2.9 43.3 1.0 O E:HOH374 3.6 67.8 1.0 OP2 E:DG1809 3.7 49.4 1.0 O B:HOH933 4.0 54.3 1.0 NH2 B:ARG328 4.1 48.0 1.0 OP1 E:DG1809 4.2 49.3 1.0 NH1 B:ARG328 4.3 51.1 1.0 CB B:ASP294 4.3 42.6 1.0 P E:DG1809 4.3 47.4 1.0 O3' E:DG1808 4.6 45.5 1.0 CZ B:ARG328 4.6 49.4 1.0 O E:HOH315 4.7 51.9 1.0 C3' E:DG1808 4.8 42.4 1.0 O B:ILE295 4.9 42.6 1.0

H.Ling, F.Boudsocq, R.Woodgate, W.Yang. Snapshots of Replication Through An Abasic Lesion; Structural Basis For Base Substitutions and Frameshifts. Mol.Cell V. 13 751 2004.
ISSN: ISSN 1097-2765
PubMed: 15023344
DOI: 10.1016/S1097-2765(04)00101-7