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Magnesium in PDB 1s5j: Insight in Dna Replication: the Crystal Structure of Dna Polymerase B1 From the Archaeon Sulfolobus Solfataricus

Enzymatic activity of Insight in Dna Replication: the Crystal Structure of Dna Polymerase B1 From the Archaeon Sulfolobus Solfataricus

All present enzymatic activity of Insight in Dna Replication: the Crystal Structure of Dna Polymerase B1 From the Archaeon Sulfolobus Solfataricus:
2.7.7.7;

Protein crystallography data

The structure of Insight in Dna Replication: the Crystal Structure of Dna Polymerase B1 From the Archaeon Sulfolobus Solfataricus, PDB code: 1s5j was solved by C.Savino, L.Federici, V.Nastopoulos, K.A.Johnson, F.M.Pisani, M.Rossi, D.Tsernoglou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 187.470, 68.800, 125.850, 90.00, 107.94, 90.00
R / Rfree (%) 23.2 / 27.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Insight in Dna Replication: the Crystal Structure of Dna Polymerase B1 From the Archaeon Sulfolobus Solfataricus (pdb code 1s5j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Insight in Dna Replication: the Crystal Structure of Dna Polymerase B1 From the Archaeon Sulfolobus Solfataricus, PDB code: 1s5j:

Magnesium binding site 1 out of 1 in 1s5j

Go back to Magnesium Binding Sites List in 1s5j
Magnesium binding site 1 out of 1 in the Insight in Dna Replication: the Crystal Structure of Dna Polymerase B1 From the Archaeon Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Insight in Dna Replication: the Crystal Structure of Dna Polymerase B1 From the Archaeon Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg892

b:49.7
occ:1.00
 OD1 A:ASP231 2.2 48.9 1.0
OD2 A:ASP413 2.2 47.1 1.0
OE2 A:GLU233 2.2 50.0 1.0
OD2 A:ASP231 2.9 46.7 1.0
CG A:ASP231 2.9 42.4 1.0
CG A:ASP413 3.2 44.5 1.0
CD A:GLU233 3.2 49.0 1.0
O A:HOH1131 3.5 48.5 1.0
CB A:ASP413 3.6 42.6 1.0
OE1 A:GLU233 3.6 51.5 1.0
O A:ILE232 3.9 40.1 1.0
O A:HOH1081 4.0 69.3 1.0
OD1 A:ASP413 4.2 45.0 1.0
OD1 A:ASN410 4.3 50.4 1.0
CB A:ASP231 4.3 38.7 1.0
CE2 A:TYR409 4.4 60.1 1.0
CG A:GLU233 4.6 45.8 1.0
C A:ILE232 4.9 40.2 1.0
O A:ASN410 4.9 48.0 1.0
CA A:ASN410 5.0 49.1 1.0
OH A:TYR409 5.0 62.4 1.0
CZ A:TYR409 5.0 60.7 1.0

Reference:

C.Savino, L.Federici, K.A.Johnson, B.Vallone, V.Nastopoulos, M.Rossi, F.M.Pisani, D.Tsernoglou. Insights Into Dna Replication: the Crystal Structure of Dna Polymerase B1 From the Archaeon Sulfolobus Solfataricus Structure V. 12 2001 2004.
ISSN: ISSN 0969-2126
PubMed: 15530364
DOI: 10.1016/J.STR.2004.09.007
Page generated: Tue Aug 13 13:16:05 2024

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