Magnesium in PDB 1s8f: Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II

The structure of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II, PDB code: 1s8f was solved by J.G.Wittmann, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.77
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	98.245, 98.245, 79.660, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / 22.1

The structure of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II also contains other interesting chemical elements:

Strontium	(Sr)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Magnesium atom in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II (pdb code 1s8f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II, PDB code: 1s8f:

Magnesium binding site 1 out of 1 in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg5401 b:20.4 occ:1.00 O B:HOH9033 1.8 23.9 1.0 O B:HOH9007 1.8 17.4 1.0 OG B:SER4021 1.9 16.2 1.0 O B:HOH9019 2.0 22.7 1.0 O B:HOH9015 2.0 19.1 1.0 O3B B:GDP6400 2.2 21.9 1.0 CB B:SER4021 3.2 21.6 1.0 PB B:GDP6400 3.5 23.8 1.0 O2B B:GDP6400 3.6 20.6 1.0 OE2 B:GLU4043 3.8 18.0 1.0 N B:SER4021 4.0 20.8 1.0 O1A B:GDP6400 4.0 26.3 1.0 CA B:SER4021 4.1 17.7 1.0 O B:HOH9053 4.1 25.9 1.0 OD2 B:ASP4062 4.2 19.6 1.0 O B:HOH9104 4.2 30.6 1.0 O B:THR4063 4.3 29.7 1.0 O3A B:GDP6400 4.4 26.2 1.0 O1B B:GDP6400 4.5 21.3 1.0 PA B:GDP6400 4.6 22.3 1.0 O B:HOH9061 4.6 29.1 1.0 CD B:GLU4043 4.6 23.1 1.0 O B:HOH9016 4.6 20.0 1.0 OE1 B:GLU4043 4.7 19.1 1.0 O2A B:GDP6400 4.7 25.5 1.0 O B:HOH9038 4.9 25.7 1.0 N B:GLY4065 4.9 37.9 1.0 CA B:ALA4064 4.9 23.7 1.0 OG1 B:THR4039 5.0 22.4 1.0 O B:HOH9164 5.0 48.1 1.0

J.G.Wittmann, M.G.Rudolph. Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II. Febs Lett. V. 568 23 2004.
ISSN: ISSN 0014-5793
PubMed: 15196914
DOI: 10.1016/J.FEBSLET.2004.05.004