Magnesium in PDB 1sgj: Crystal Structure of Citrate Lyase Beta Subunit
Protein crystallography data
The structure of Crystal Structure of Citrate Lyase Beta Subunit, PDB code: 1sgj
was solved by
S.Eswaramoorthy,
S.Swaminathan,
S.K.Burley,
New York Sgxresearch Center For Structural Genomics (Nysgxrc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
500.00 /
1.84
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.610,
73.280,
74.480,
68.26,
83.51,
68.38
|
R / Rfree (%)
|
22.7 /
24.3
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Citrate Lyase Beta Subunit
(pdb code 1sgj). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the
Crystal Structure of Citrate Lyase Beta Subunit, PDB code: 1sgj:
Jump to Magnesium binding site number:
1;
2;
3;
Magnesium binding site 1 out
of 3 in 1sgj
Go back to
Magnesium Binding Sites List in 1sgj
Magnesium binding site 1 out
of 3 in the Crystal Structure of Citrate Lyase Beta Subunit
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Citrate Lyase Beta Subunit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg286
b:32.8
occ:1.00
|
O5
|
A:OAA285
|
1.8
|
56.9
|
1.0
|
O
|
A:HOH356
|
2.1
|
66.3
|
1.0
|
OE1
|
A:GLU129
|
2.4
|
22.4
|
1.0
|
O3
|
A:OAA285
|
2.7
|
56.7
|
1.0
|
C4
|
A:OAA285
|
2.8
|
56.9
|
1.0
|
O
|
A:HOH287
|
3.1
|
40.7
|
1.0
|
NH1
|
A:ARG74
|
3.1
|
20.3
|
1.0
|
O
|
A:HOH288
|
3.1
|
26.2
|
1.0
|
C3
|
A:OAA285
|
3.2
|
56.9
|
1.0
|
CD
|
A:GLU129
|
3.5
|
20.0
|
1.0
|
OD2
|
A:ASP39
|
3.7
|
35.7
|
1.0
|
OE2
|
A:GLU129
|
3.8
|
21.4
|
1.0
|
O4
|
A:OAA285
|
3.9
|
57.8
|
1.0
|
OH
|
A:TYR150
|
3.9
|
17.6
|
1.0
|
CE1
|
A:TYR150
|
3.9
|
17.5
|
1.0
|
O
|
A:HOH456
|
4.0
|
49.0
|
1.0
|
CZ
|
A:ARG74
|
4.1
|
18.6
|
1.0
|
NH2
|
A:ARG74
|
4.3
|
17.4
|
1.0
|
CZ
|
A:TYR150
|
4.3
|
18.5
|
1.0
|
OD2
|
A:ASP155
|
4.3
|
26.6
|
1.0
|
O
|
A:HOH362
|
4.5
|
40.7
|
1.0
|
C2
|
A:OAA285
|
4.7
|
58.0
|
1.0
|
O
|
A:HOH470
|
4.7
|
41.3
|
1.0
|
OE1
|
A:GLU38
|
4.7
|
25.8
|
1.0
|
CG
|
A:ASP155
|
4.7
|
25.9
|
1.0
|
CG
|
A:GLU129
|
4.8
|
18.2
|
1.0
|
CG
|
A:ASP39
|
4.9
|
32.2
|
1.0
|
CD1
|
A:TYR150
|
5.0
|
18.1
|
1.0
|
|
Magnesium binding site 2 out
of 3 in 1sgj
Go back to
Magnesium Binding Sites List in 1sgj
Magnesium binding site 2 out
of 3 in the Crystal Structure of Citrate Lyase Beta Subunit
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Citrate Lyase Beta Subunit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg286
b:39.8
occ:1.00
|
O5
|
B:OAA285
|
1.9
|
55.2
|
1.0
|
OE1
|
B:GLU129
|
2.4
|
22.1
|
1.0
|
O3
|
B:OAA285
|
2.8
|
54.8
|
1.0
|
C4
|
B:OAA285
|
2.9
|
56.2
|
1.0
|
O
|
B:HOH576
|
2.9
|
44.9
|
1.0
|
NH1
|
B:ARG74
|
2.9
|
18.2
|
1.0
|
C3
|
B:OAA285
|
3.3
|
55.5
|
1.0
|
CD
|
B:GLU129
|
3.3
|
19.4
|
1.0
|
O
|
B:HOH577
|
3.4
|
21.0
|
1.0
|
OH
|
B:TYR150
|
3.5
|
17.8
|
1.0
|
OE2
|
B:GLU129
|
3.6
|
21.1
|
1.0
|
CE1
|
B:TYR150
|
3.7
|
16.8
|
1.0
|
CZ
|
B:ARG74
|
4.0
|
17.9
|
1.0
|
CZ
|
B:TYR150
|
4.0
|
18.2
|
1.0
|
OD2
|
B:ASP39
|
4.0
|
36.4
|
1.0
|
O4
|
B:OAA285
|
4.0
|
58.3
|
1.0
|
OD2
|
B:ASP155
|
4.1
|
26.0
|
1.0
|
NH2
|
B:ARG74
|
4.2
|
17.9
|
1.0
|
OE1
|
B:GLU38
|
4.5
|
27.8
|
1.0
|
CG
|
B:GLU129
|
4.7
|
19.1
|
1.0
|
C2
|
B:OAA285
|
4.8
|
55.9
|
1.0
|
CG
|
B:ASP155
|
4.8
|
23.7
|
1.0
|
CD1
|
B:TYR150
|
4.8
|
17.0
|
1.0
|
O
|
B:HOH813
|
4.9
|
44.8
|
1.0
|
CG
|
B:ASP39
|
5.0
|
34.2
|
1.0
|
|
Magnesium binding site 3 out
of 3 in 1sgj
Go back to
Magnesium Binding Sites List in 1sgj
Magnesium binding site 3 out
of 3 in the Crystal Structure of Citrate Lyase Beta Subunit
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Citrate Lyase Beta Subunit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg286
b:47.8
occ:1.00
|
O5
|
C:OAA285
|
2.1
|
59.8
|
1.0
|
O3
|
C:OAA285
|
2.6
|
62.2
|
1.0
|
OE1
|
C:GLU129
|
2.6
|
22.2
|
1.0
|
C4
|
C:OAA285
|
2.8
|
60.8
|
1.0
|
NH1
|
C:ARG74
|
2.8
|
24.6
|
1.0
|
C3
|
C:OAA285
|
3.0
|
60.5
|
1.0
|
O
|
C:HOH578
|
3.0
|
45.6
|
1.0
|
O
|
C:HOH579
|
3.2
|
50.2
|
1.0
|
OD2
|
C:ASP39
|
3.4
|
41.0
|
1.0
|
CD
|
C:GLU129
|
3.6
|
20.5
|
1.0
|
OD2
|
C:ASP155
|
3.7
|
32.0
|
1.0
|
OH
|
C:TYR150
|
3.7
|
18.0
|
1.0
|
OE2
|
C:GLU129
|
3.8
|
20.1
|
1.0
|
CZ
|
C:ARG74
|
3.8
|
24.3
|
1.0
|
O4
|
C:OAA285
|
3.9
|
62.1
|
1.0
|
NH2
|
C:ARG74
|
4.0
|
23.9
|
1.0
|
CE1
|
C:TYR150
|
4.2
|
17.6
|
1.0
|
CZ
|
C:TYR150
|
4.3
|
17.6
|
1.0
|
OE1
|
C:GLU38
|
4.4
|
31.1
|
1.0
|
C2
|
C:OAA285
|
4.4
|
60.2
|
1.0
|
CG
|
C:ASP39
|
4.6
|
38.8
|
1.0
|
CG
|
C:ASP155
|
4.8
|
28.8
|
1.0
|
O1
|
C:OAA285
|
4.9
|
61.0
|
1.0
|
CG
|
C:GLU129
|
5.0
|
19.9
|
1.0
|
|
Reference:
S.Eswaramoorthy,
S.Swaminathan.
Crystal Structure of Citrate Lyase Beta Subunit To Be Published.
Page generated: Tue Aug 13 13:43:20 2024
|