Magnesium in PDB 1sgj: Crystal Structure of Citrate Lyase Beta Subunit

The structure of Crystal Structure of Citrate Lyase Beta Subunit, PDB code: 1sgj was solved by S.Eswaramoorthy, S.Swaminathan, S.K.Burley, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	500.00 / 1.84
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	57.610, 73.280, 74.480, 68.26, 83.51, 68.38
R / Rfree (%)	22.7 / 24.3

The binding sites of Magnesium atom in the Crystal Structure of Citrate Lyase Beta Subunit (pdb code 1sgj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Citrate Lyase Beta Subunit, PDB code: 1sgj:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Citrate Lyase Beta Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Citrate Lyase Beta Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg286 b:32.8 occ:1.00 O5 A:OAA285 1.8 56.9 1.0 O A:HOH356 2.1 66.3 1.0 OE1 A:GLU129 2.4 22.4 1.0 O3 A:OAA285 2.7 56.7 1.0 C4 A:OAA285 2.8 56.9 1.0 O A:HOH287 3.1 40.7 1.0 NH1 A:ARG74 3.1 20.3 1.0 O A:HOH288 3.1 26.2 1.0 C3 A:OAA285 3.2 56.9 1.0 CD A:GLU129 3.5 20.0 1.0 OD2 A:ASP39 3.7 35.7 1.0 OE2 A:GLU129 3.8 21.4 1.0 O4 A:OAA285 3.9 57.8 1.0 OH A:TYR150 3.9 17.6 1.0 CE1 A:TYR150 3.9 17.5 1.0 O A:HOH456 4.0 49.0 1.0 CZ A:ARG74 4.1 18.6 1.0 NH2 A:ARG74 4.3 17.4 1.0 CZ A:TYR150 4.3 18.5 1.0 OD2 A:ASP155 4.3 26.6 1.0 O A:HOH362 4.5 40.7 1.0 C2 A:OAA285 4.7 58.0 1.0 O A:HOH470 4.7 41.3 1.0 OE1 A:GLU38 4.7 25.8 1.0 CG A:ASP155 4.7 25.9 1.0 CG A:GLU129 4.8 18.2 1.0 CG A:ASP39 4.9 32.2 1.0 CD1 A:TYR150 5.0 18.1 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Citrate Lyase Beta Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Citrate Lyase Beta Subunit within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg286 b:39.8 occ:1.00 O5 B:OAA285 1.9 55.2 1.0 OE1 B:GLU129 2.4 22.1 1.0 O3 B:OAA285 2.8 54.8 1.0 C4 B:OAA285 2.9 56.2 1.0 O B:HOH576 2.9 44.9 1.0 NH1 B:ARG74 2.9 18.2 1.0 C3 B:OAA285 3.3 55.5 1.0 CD B:GLU129 3.3 19.4 1.0 O B:HOH577 3.4 21.0 1.0 OH B:TYR150 3.5 17.8 1.0 OE2 B:GLU129 3.6 21.1 1.0 CE1 B:TYR150 3.7 16.8 1.0 CZ B:ARG74 4.0 17.9 1.0 CZ B:TYR150 4.0 18.2 1.0 OD2 B:ASP39 4.0 36.4 1.0 O4 B:OAA285 4.0 58.3 1.0 OD2 B:ASP155 4.1 26.0 1.0 NH2 B:ARG74 4.2 17.9 1.0 OE1 B:GLU38 4.5 27.8 1.0 CG B:GLU129 4.7 19.1 1.0 C2 B:OAA285 4.8 55.9 1.0 CG B:ASP155 4.8 23.7 1.0 CD1 B:TYR150 4.8 17.0 1.0 O B:HOH813 4.9 44.8 1.0 CG B:ASP39 5.0 34.2 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Citrate Lyase Beta Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Citrate Lyase Beta Subunit within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg286 b:47.8 occ:1.00 O5 C:OAA285 2.1 59.8 1.0 O3 C:OAA285 2.6 62.2 1.0 OE1 C:GLU129 2.6 22.2 1.0 C4 C:OAA285 2.8 60.8 1.0 NH1 C:ARG74 2.8 24.6 1.0 C3 C:OAA285 3.0 60.5 1.0 O C:HOH578 3.0 45.6 1.0 O C:HOH579 3.2 50.2 1.0 OD2 C:ASP39 3.4 41.0 1.0 CD C:GLU129 3.6 20.5 1.0 OD2 C:ASP155 3.7 32.0 1.0 OH C:TYR150 3.7 18.0 1.0 OE2 C:GLU129 3.8 20.1 1.0 CZ C:ARG74 3.8 24.3 1.0 O4 C:OAA285 3.9 62.1 1.0 NH2 C:ARG74 4.0 23.9 1.0 CE1 C:TYR150 4.2 17.6 1.0 CZ C:TYR150 4.3 17.6 1.0 OE1 C:GLU38 4.4 31.1 1.0 C2 C:OAA285 4.4 60.2 1.0 CG C:ASP39 4.6 38.8 1.0 CG C:ASP155 4.8 28.8 1.0 O1 C:OAA285 4.9 61.0 1.0 CG C:GLU129 5.0 19.9 1.0

S.Eswaramoorthy, S.Swaminathan. Crystal Structure of Citrate Lyase Beta Subunit To Be Published.