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Magnesium in PDB 1shu: Crystal Structure of the Von Willebrand Factor A Domain of Human Capillary Morphogenesis Protein 2: An Anthrax Toxin Receptor

Protein crystallography data

The structure of Crystal Structure of the Von Willebrand Factor A Domain of Human Capillary Morphogenesis Protein 2: An Anthrax Toxin Receptor, PDB code: 1shu was solved by D.B.Lacy, D.J.Wigelsworth, H.M.Scobie, J.A.T.Young, R.J.Collier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.75 / 1.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.419, 57.419, 111.459, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 21.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Von Willebrand Factor A Domain of Human Capillary Morphogenesis Protein 2: An Anthrax Toxin Receptor (pdb code 1shu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Von Willebrand Factor A Domain of Human Capillary Morphogenesis Protein 2: An Anthrax Toxin Receptor, PDB code: 1shu:

Magnesium binding site 1 out of 1 in 1shu

Go back to Magnesium Binding Sites List in 1shu
Magnesium binding site 1 out of 1 in the Crystal Structure of the Von Willebrand Factor A Domain of Human Capillary Morphogenesis Protein 2: An Anthrax Toxin Receptor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Von Willebrand Factor A Domain of Human Capillary Morphogenesis Protein 2: An Anthrax Toxin Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Mg219

b:9.8
occ:1.00
O X:HOH220 2.0 9.3 1.0
O X:HOH222 2.1 10.3 1.0
OG X:SER52 2.1 9.6 1.0
OG1 X:THR118 2.1 8.2 1.0
OG X:SER54 2.2 9.8 1.0
CB X:SER52 3.1 9.6 1.0
CB X:SER54 3.2 10.6 1.0
CB X:THR118 3.4 8.8 1.0
CG2 X:THR118 3.6 9.1 1.0
N X:SER54 3.9 10.6 1.0
CA X:SER54 4.1 10.6 1.0
OD2 X:ASP148 4.1 11.7 1.0
OD1 X:ASP50 4.1 10.0 1.0
OD1 X:ASP148 4.2 11.1 1.0
O X:HOH354 4.2 23.9 1.0
OD2 X:ASP50 4.3 10.1 1.0
O X:LYS150 4.3 10.4 1.0
CA X:SER52 4.4 10.1 1.0
CA X:THR118 4.5 9.1 1.0
C X:SER52 4.5 10.7 1.0
CG X:ASP148 4.6 11.2 1.0
CG X:ASP50 4.7 9.6 1.0
N X:GLY53 4.7 11.5 1.0
N X:VAL55 4.8 13.5 1.0
C X:SER54 4.8 12.0 1.0
N X:THR118 4.9 9.2 1.0
O X:SER52 4.9 11.6 1.0
O X:GLY116 5.0 10.4 1.0

Reference:

D.B.Lacy, D.J.Wigelsworth, H.M.Scobie, J.A.T.Young, R.J.Collier. Crystal Structure of the Von Willebrand Factor A Domain of Human Capillary Morphogenesis Protein 2: An Anthrax Toxin Receptor Proc.Natl.Acad.Sci.Usa V. 101 6367 2004.
ISSN: ISSN 0027-8424
PubMed: 15079089
DOI: 10.1073/PNAS.0401506101
Page generated: Tue Aug 13 13:43:47 2024

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