Magnesium in PDB 1sl5: Crystal Structure of Dc-Sign Carbohydrate Recognition Domain Complexed with Lnfp III (Dextra L504).

The structure of Crystal Structure of Dc-Sign Carbohydrate Recognition Domain Complexed with Lnfp III (Dextra L504)., PDB code: 1sl5 was solved by Y.Guo, H.Feinberg, E.Conroy, D.A.Mitchell, R.Alvarez, O.Blixt, M.E.Taylor, W.I.Weis, K.Drickamer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.02 / 1.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	72.570, 55.370, 29.630, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 22.3

The structure of Crystal Structure of Dc-Sign Carbohydrate Recognition Domain Complexed with Lnfp III (Dextra L504). also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Dc-Sign Carbohydrate Recognition Domain Complexed with Lnfp III (Dextra L504). (pdb code 1sl5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Dc-Sign Carbohydrate Recognition Domain Complexed with Lnfp III (Dextra L504)., PDB code: 1sl5:

Magnesium binding site 1 out of 1 in the Crystal Structure of Dc-Sign Carbohydrate Recognition Domain Complexed with Lnfp III (Dextra L504).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dc-Sign Carbohydrate Recognition Domain Complexed with Lnfp III (Dextra L504). within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:18.1 occ:1.00 O A:HOH405 2.1 12.8 1.0 O A:HOH410 2.1 17.4 1.0 OD2 A:ASP355 2.1 13.8 1.0 O A:HOH404 2.1 14.8 1.0 O A:HOH406 2.2 15.4 1.0 O A:HOH409 2.2 23.5 1.0 CG A:ASP355 3.0 13.2 1.0 OD1 A:ASP355 3.3 12.5 1.0 OE1 A:GLU324 3.8 15.3 1.0 O A:HOH575 4.1 36.1 1.0 O A:LEU321 4.2 20.4 1.0 O A:HOH579 4.2 38.1 1.0 O A:HOH408 4.2 18.7 1.0 O A:HOH411 4.2 16.0 1.0 CB A:ASP355 4.3 12.4 1.0 O A:ASP320 4.6 16.8 1.0 CA A:LEU321 4.7 17.1 1.0 O A:HOH534 4.7 31.6 1.0 OE1 A:GLU353 4.8 25.5 1.0 O A:HOH591 4.8 33.6 1.0 C A:LEU321 4.9 20.2 1.0 CD A:GLU324 4.9 15.3 1.0 CD2 A:LEU321 4.9 16.7 1.0 CD A:GLU353 4.9 23.8 1.0 CB A:GLU353 5.0 16.7 1.0

Y.Guo, H.Feinberg, E.Conroy, D.A.Mitchell, R.Alvarez, O.Blixt, M.E.Taylor, W.I.Weis, K.Drickamer. Structural Basis For Distinct Ligand-Binding and Targeting Properties of the Receptors Dc-Sign and Dc-Signr Nat.Struct.Mol.Biol. V. 11 591 2004.
ISSN: ISSN 1545-9993
PubMed: 15195147
DOI: 10.1038/NSMB784