Atomistry » Magnesium » PDB 1so6-1t5s » 1t0t
Atomistry »
  Magnesium »
    PDB 1so6-1t5s »
      1t0t »

Magnesium in PDB 1t0t: Crystallographic Structure of A Putative Chlorite Dismutase

Protein crystallography data

The structure of Crystallographic Structure of A Putative Chlorite Dismutase, PDB code: 1t0t was solved by M.Gilski, D.Borek, Y.Chen, F.Collart, A.Joachimiak, Z.Otwinowski, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.75
Space group I 2 3 1
Cell size a, b, c (Å), α, β, γ (°) 202.839, 202.839, 202.839, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 19.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystallographic Structure of A Putative Chlorite Dismutase (pdb code 1t0t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Crystallographic Structure of A Putative Chlorite Dismutase, PDB code: 1t0t:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 1t0t

Go back to Magnesium Binding Sites List in 1t0t
Magnesium binding site 1 out of 5 in the Crystallographic Structure of A Putative Chlorite Dismutase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystallographic Structure of A Putative Chlorite Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Mg4004

b:21.6
occ:1.00
O V:HOH4262 2.1 23.6 1.0
O V:HOH4263 2.1 18.6 1.0
O V:HOH4260 2.1 21.9 1.0
O Z:HOH5841 2.1 20.4 1.0
O Z:HOH5842 2.2 22.2 1.0
O V:HOH4261 2.2 22.2 1.0
O V:HOH4134 3.9 24.7 1.0
O Z:HOH5653 4.0 20.5 1.0
O Z:HOH5603 4.0 20.4 1.0
O V:LEU98 4.2 14.7 1.0
O Z:HOH5743 4.3 43.0 1.0
O Z:HOH5685 4.3 22.9 1.0
CD V:PRO100 4.3 18.5 1.0
O V:HOH4041 4.3 17.6 1.0
O V:HOH4020 4.5 20.2 1.0
CG V:PRO100 4.5 25.1 1.0
O V:HOH4131 4.6 28.6 1.0
NH1 V:ARG18 4.6 16.2 1.0
O Z:ILE20 4.6 15.9 1.0
O V:ALA95 4.6 18.2 1.0
OD1 V:ASN90 4.6 21.1 1.0
CD1 Z:TRP22 5.0 17.3 1.0

Magnesium binding site 2 out of 5 in 1t0t

Go back to Magnesium Binding Sites List in 1t0t
Magnesium binding site 2 out of 5 in the Crystallographic Structure of A Putative Chlorite Dismutase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystallographic Structure of A Putative Chlorite Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Mg4003

b:21.0
occ:1.00
O W:HOH4255 2.0 18.1 1.0
O W:HOH4258 2.1 19.8 1.0
O W:HOH4256 2.1 20.3 1.0
O W:HOH4257 2.1 21.8 1.0
O V:HOH4259 2.2 24.2 1.0
O V:HOH4258 2.2 20.5 1.0
O W:HOH4033 3.9 22.7 1.0
O V:HOH4030 4.0 20.0 1.0
O V:HOH4018 4.1 23.0 1.0
O W:LEU98 4.3 18.5 1.0
O V:HOH4088 4.3 21.7 1.0
O W:HOH4024 4.3 21.0 1.0
O V:HOH4163 4.3 38.8 1.0
O W:HOH4020 4.4 22.1 1.0
CD W:PRO100 4.4 19.8 1.0
O V:HOH4233 4.5 31.1 1.0
O W:ALA95 4.6 19.9 1.0
NH1 W:ARG18 4.6 18.2 1.0
O V:ILE20 4.7 17.1 1.0
OD1 W:ASN90 4.7 23.8 1.0
CG W:PRO100 4.8 23.8 1.0

Magnesium binding site 3 out of 5 in 1t0t

Go back to Magnesium Binding Sites List in 1t0t
Magnesium binding site 3 out of 5 in the Crystallographic Structure of A Putative Chlorite Dismutase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystallographic Structure of A Putative Chlorite Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Mg4005

b:18.9
occ:1.00
O X:HOH5600 2.1 18.9 1.0
O X:HOH5599 2.1 17.0 1.0
O X:HOH5601 2.1 17.4 1.0
O X:HOH5602 2.1 19.4 1.0
O Y:HOH5598 2.2 17.3 1.0
O Y:HOH5597 2.2 18.1 1.0
O X:HOH592 4.0 19.1 1.0
O Y:HOH777 4.0 17.4 1.0
O Y:HOH773 4.0 19.0 1.0
O Y:HOH893 4.2 36.2 1.0
O X:HOH531 4.2 19.5 1.0
O X:LEU98 4.2 15.6 1.0
O Y:HOH838 4.3 18.1 1.0
CD X:PRO100 4.3 15.8 1.0
O X:HOH664 4.4 30.8 1.0
O X:HOH502 4.4 20.8 1.0
O Y:ILE20 4.6 16.9 1.0
CG X:PRO100 4.6 18.6 1.0
NH1 X:ARG18 4.7 18.5 1.0
O X:ALA95 4.7 17.2 1.0
OD1 X:ASN90 4.8 22.7 1.0

Magnesium binding site 4 out of 5 in 1t0t

Go back to Magnesium Binding Sites List in 1t0t
Magnesium binding site 4 out of 5 in the Crystallographic Structure of A Putative Chlorite Dismutase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystallographic Structure of A Putative Chlorite Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Mg4002

b:26.9
occ:1.00
O W:HOH4254 2.0 28.0 1.0
O Y:HOH5582 2.1 24.7 1.0
O W:HOH4253 2.1 27.5 1.0
O W:HOH4252 2.2 29.2 1.0
O Y:HOH5581 2.2 23.1 1.0
O Y:HOH5583 2.3 27.9 1.0
O W:HOH4136 3.8 48.5 1.0
O W:HOH4023 3.9 24.4 1.0
O Y:HOH839 3.9 29.9 1.0
O W:HOH4019 4.0 23.0 1.0
O W:HOH4093 4.3 26.4 1.0
O Y:LEU98 4.3 17.5 1.0
CD Y:PRO100 4.3 26.4 1.0
O W:HOH4242 4.3 42.6 1.0
O Y:HOH790 4.4 25.5 1.0
NH1 Y:ARG18 4.6 20.0 1.0
O Y:HOH778 4.6 20.0 1.0
O W:ILE20 4.7 16.9 1.0
CG Y:PRO100 4.7 29.3 1.0
OD1 Y:ASN90 4.7 24.3 1.0
N Y:PRO100 4.8 23.4 1.0
O Y:ALA95 4.9 16.7 1.0
CD1 W:TRP22 4.9 14.4 1.0

Magnesium binding site 5 out of 5 in 1t0t

Go back to Magnesium Binding Sites List in 1t0t
Magnesium binding site 5 out of 5 in the Crystallographic Structure of A Putative Chlorite Dismutase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystallographic Structure of A Putative Chlorite Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Mg4001

b:22.5
occ:1.00
O Z:HOH5839 2.1 19.2 1.0
O Z:HOH5837 2.1 31.3 1.0
O X:HOH5575 2.1 30.7 1.0
O Z:HOH5838 2.1 26.4 1.0
O Z:HOH5840 2.1 31.0 1.0
O X:HOH5577 2.1 25.9 1.0
O Z:HOH5611 3.8 32.2 1.0
O X:HOH507 4.0 22.2 1.0
O X:HOH508 4.0 23.6 1.0
O X:HOH616 4.3 44.0 1.0
O X:HOH581 4.3 27.0 1.0
O Z:HOH5609 4.4 21.2 1.0
O Z:HOH5711 4.4 33.3 1.0
O Z:LEU98 4.4 18.2 1.0
CD Z:PRO100 4.4 23.4 1.0
O Z:HOH5600 4.5 19.5 1.0
NH1 Z:ARG18 4.7 20.9 1.0
OD1 Z:ASN90 4.7 22.0 1.0
O X:ILE20 4.7 18.6 1.0
O Z:ALA95 4.8 17.4 1.0
CG Z:PRO100 4.8 25.5 1.0
CD1 X:TRP22 4.9 15.5 1.0

Reference:

M.Gilski, D.Borek, Y.Chen, F.Collart, A.Joachimiak, Z.Otwinowski. Crystal Structure of APC35880 Protein From Bacillus Stearothermophilus To Be Published.
Page generated: Tue Aug 13 14:24:53 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy