Magnesium in PDB 1t5j: Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii

The structure of Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii, PDB code: 1t5j was solved by A.Gogos, J.Gorman, L.Shapiro, S.K.Burley, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.94 / 2.70
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	69.775, 69.775, 139.724, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 26.5

The binding sites of Magnesium atom in the Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii (pdb code 1t5j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii, PDB code: 1t5j:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg500 b:57.1 occ:0.50 MG A:MG500 0.0 57.1 0.5 OD2 A:ASP255 2.3 46.9 1.0 OD1 A:ASP61 2.3 64.4 1.0 O A:HOH513 2.4 75.5 1.0 MG A:MG500 2.5 46.1 0.5 OD1 A:ASP62 3.1 54.0 1.0 CG A:ASP255 3.4 45.6 1.0 OG1 A:THR60 3.4 46.4 1.0 OE1 A:GLU26 3.4 60.3 1.0 CG A:ASP61 3.4 62.5 1.0 OE2 A:GLU26 3.6 60.2 1.0 CD A:GLU26 3.8 58.5 1.0 OD1 A:ASP255 3.9 41.7 1.0 OD2 A:ASP61 3.9 65.3 1.0 OD2 A:ASP97 4.0 67.0 1.0 CB A:THR60 4.1 47.5 1.0 CG A:ASP62 4.2 54.5 1.0 O A:ASP97 4.3 60.1 1.0 CB A:ASP255 4.5 42.4 1.0 O A:HOH544 4.6 66.2 1.0 CB A:ASP61 4.6 57.1 1.0 N A:ASP61 4.7 49.9 1.0 CG2 A:THR60 4.7 48.0 1.0 N A:ASP62 4.8 50.9 1.0 OD2 A:ASP62 4.9 55.8 1.0 CG A:ASP97 4.9 65.3 1.0 OG A:SER256 4.9 43.1 1.0 OH A:TYR49 4.9 44.4 1.0 CB A:ASP97 4.9 64.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg500 b:46.1 occ:0.50 MG A:MG500 0.0 46.1 0.5 MG A:MG500 2.5 57.1 0.5 OD2 A:ASP255 2.6 46.9 1.0 OG A:SER256 3.0 43.1 1.0 OD1 A:ASP255 3.0 41.7 1.0 OD2 A:ASP253 3.1 61.5 1.0 CG A:ASP255 3.2 45.6 1.0 OD1 A:ASP62 3.3 54.0 1.0 OE2 A:GLU26 3.3 60.2 1.0 O A:HOH513 3.5 75.5 1.0 CG A:ASP253 3.9 56.9 1.0 OD1 A:ASP253 4.0 59.5 1.0 OD1 A:ASP61 4.0 64.4 1.0 O A:HOH544 4.0 66.2 1.0 CD A:GLU26 4.1 58.5 1.0 CG A:ASP62 4.2 54.5 1.0 OD2 A:ASP62 4.2 55.8 1.0 CB A:SER256 4.3 43.0 1.0 OE1 A:GLU26 4.3 60.3 1.0 N A:SER256 4.6 41.9 1.0 OD2 A:ASP61 4.7 65.3 1.0 CB A:ASP255 4.7 42.4 1.0 CG A:ASP61 4.8 62.5 1.0 SD A:MET126 4.8 54.5 1.0 CA A:SER256 5.0 42.9 1.0

A.Gogos, J.Gorman, L.Shapiro. Crystal Structure of Hypothetical Protein MJ1187 From Methanococcus Jannaschii To Be Published.