Atomistry » Magnesium » PDB 1so6-1t5s » 1t5j
Atomistry »
  Magnesium »
    PDB 1so6-1t5s »
      1t5j »

Magnesium in PDB 1t5j: Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii

Protein crystallography data

The structure of Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii, PDB code: 1t5j was solved by A.Gogos, J.Gorman, L.Shapiro, S.K.Burley, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.94 / 2.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 69.775, 69.775, 139.724, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 26.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii (pdb code 1t5j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii, PDB code: 1t5j:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1t5j

Go back to Magnesium Binding Sites List in 1t5j
Magnesium binding site 1 out of 2 in the Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg500

b:57.1
occ:0.50
MG A:MG500 0.0 57.1 0.5
OD2 A:ASP255 2.3 46.9 1.0
OD1 A:ASP61 2.3 64.4 1.0
O A:HOH513 2.4 75.5 1.0
MG A:MG500 2.5 46.1 0.5
OD1 A:ASP62 3.1 54.0 1.0
CG A:ASP255 3.4 45.6 1.0
OG1 A:THR60 3.4 46.4 1.0
OE1 A:GLU26 3.4 60.3 1.0
CG A:ASP61 3.4 62.5 1.0
OE2 A:GLU26 3.6 60.2 1.0
CD A:GLU26 3.8 58.5 1.0
OD1 A:ASP255 3.9 41.7 1.0
OD2 A:ASP61 3.9 65.3 1.0
OD2 A:ASP97 4.0 67.0 1.0
CB A:THR60 4.1 47.5 1.0
CG A:ASP62 4.2 54.5 1.0
O A:ASP97 4.3 60.1 1.0
CB A:ASP255 4.5 42.4 1.0
O A:HOH544 4.6 66.2 1.0
CB A:ASP61 4.6 57.1 1.0
N A:ASP61 4.7 49.9 1.0
CG2 A:THR60 4.7 48.0 1.0
N A:ASP62 4.8 50.9 1.0
OD2 A:ASP62 4.9 55.8 1.0
CG A:ASP97 4.9 65.3 1.0
OG A:SER256 4.9 43.1 1.0
OH A:TYR49 4.9 44.4 1.0
CB A:ASP97 4.9 64.0 1.0

Magnesium binding site 2 out of 2 in 1t5j

Go back to Magnesium Binding Sites List in 1t5j
Magnesium binding site 2 out of 2 in the Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Ribosylglycohydrolase MJ1187 From Methanococcus Jannaschii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg500

b:46.1
occ:0.50
MG A:MG500 0.0 46.1 0.5
MG A:MG500 2.5 57.1 0.5
OD2 A:ASP255 2.6 46.9 1.0
OG A:SER256 3.0 43.1 1.0
OD1 A:ASP255 3.0 41.7 1.0
OD2 A:ASP253 3.1 61.5 1.0
CG A:ASP255 3.2 45.6 1.0
OD1 A:ASP62 3.3 54.0 1.0
OE2 A:GLU26 3.3 60.2 1.0
O A:HOH513 3.5 75.5 1.0
CG A:ASP253 3.9 56.9 1.0
OD1 A:ASP253 4.0 59.5 1.0
OD1 A:ASP61 4.0 64.4 1.0
O A:HOH544 4.0 66.2 1.0
CD A:GLU26 4.1 58.5 1.0
CG A:ASP62 4.2 54.5 1.0
OD2 A:ASP62 4.2 55.8 1.0
CB A:SER256 4.3 43.0 1.0
OE1 A:GLU26 4.3 60.3 1.0
N A:SER256 4.6 41.9 1.0
OD2 A:ASP61 4.7 65.3 1.0
CB A:ASP255 4.7 42.4 1.0
CG A:ASP61 4.8 62.5 1.0
SD A:MET126 4.8 54.5 1.0
CA A:SER256 5.0 42.9 1.0

Reference:

A.Gogos, J.Gorman, L.Shapiro. Crystal Structure of Hypothetical Protein MJ1187 From Methanococcus Jannaschii To Be Published.
Page generated: Tue Aug 13 14:26:53 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy