Magnesium in PDB 1tez: Complex Between Dna and the Dna Photolyase From Anacystis Nidulans

All present enzymatic activity of Complex Between Dna and the Dna Photolyase From Anacystis Nidulans:
4.1.99.3;

The structure of Complex Between Dna and the Dna Photolyase From Anacystis Nidulans, PDB code: 1tez was solved by L.-O.Essen, T.Carell, A.Mees, T.Klar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.92 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	173.815, 88.505, 161.622, 90.00, 90.11, 90.00
R / Rfree (%)	20.5 / 22.6

The binding sites of Magnesium atom in the Complex Between Dna and the Dna Photolyase From Anacystis Nidulans (pdb code 1tez). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Complex Between Dna and the Dna Photolyase From Anacystis Nidulans, PDB code: 1tez:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Complex Between Dna and the Dna Photolyase From Anacystis Nidulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Complex Between Dna and the Dna Photolyase From Anacystis Nidulans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg9002 b:50.7 occ:1.00 OP1 J:DC12 1.9 41.0 0.8 O A:HOH9411 2.0 48.5 1.0 O J:HOH1611 2.0 46.5 1.0 O A:HOH9410 2.0 50.3 1.0 OD2 A:ASP399 2.1 49.8 1.0 O J:HOH1610 2.1 47.0 1.0 CG A:ASP399 3.1 51.6 1.0 P J:DC12 3.4 44.0 0.8 OD1 A:ASP399 3.4 51.1 1.0 O5' J:DC12 4.0 43.2 0.8 C5' J:DC12 4.2 40.3 0.8 OP2 J:DC12 4.3 45.5 0.8 O3' J:DC11 4.3 44.6 0.8 O A:MET398 4.4 52.2 1.0 CB A:ASP399 4.5 49.7 1.0 C3' J:DC11 4.5 45.8 0.8 C5' J:DC11 4.7 47.9 0.8 C4' J:DC11 4.7 46.8 0.8 O J:HOH1465 4.8 56.6 1.0 C A:MET398 5.0 52.0 1.0

Magnesium binding site 2 out of 2 in the Complex Between Dna and the Dna Photolyase From Anacystis Nidulans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Complex Between Dna and the Dna Photolyase From Anacystis Nidulans within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg9001 b:51.6 occ:1.00 OP1 L:DC12 1.9 43.5 0.8 O B:HOH9405 2.1 49.8 1.0 O L:HOH1609 2.2 46.6 1.0 OD1 B:ASP399 2.2 56.4 1.0 O B:HOH9305 2.4 44.2 1.0 CG B:ASP399 3.1 55.9 1.0 P L:DC12 3.3 45.5 0.8 OD2 B:ASP399 3.4 58.3 1.0 O5' L:DC12 4.0 46.7 0.8 C5' L:DC12 4.1 44.3 0.8 O B:MET398 4.1 54.1 1.0 O3' L:DC11 4.3 46.0 0.8 OP2 L:DC12 4.3 47.6 0.8 C3' L:DC11 4.4 47.9 0.8 CB B:ASP399 4.5 54.8 1.0 C5' L:DC11 4.6 50.3 0.8 C4' L:DC11 4.6 48.9 0.8 O L:HOH1464 4.6 55.3 1.0

A.Mees, T.Klar, P.Gnau, U.Hennecke, A.P.M.Eker, T.Carell, L.-O.Essen. Crystal Structure of A Photolyase Bound to A Cpd-Like Dna Lesion After in Situ Repair Science V. 306 1789 2004.
ISSN: ISSN 0036-8075
PubMed: 15576622
DOI: 10.1126/SCIENCE.1101598