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Magnesium in PDB 1tt4: Structure of NP459575, A Predicted Glutathione Synthase From Salmonella Typhimurium

Protein crystallography data

The structure of Structure of NP459575, A Predicted Glutathione Synthase From Salmonella Typhimurium, PDB code: 1tt4 was solved by D.J.Miller, L.Shuvalova, W.F.Anderson, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.92 / 2.80
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 188.929, 188.929, 188.929, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 25.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of NP459575, A Predicted Glutathione Synthase From Salmonella Typhimurium (pdb code 1tt4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of NP459575, A Predicted Glutathione Synthase From Salmonella Typhimurium, PDB code: 1tt4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1tt4

Go back to Magnesium Binding Sites List in 1tt4
Magnesium binding site 1 out of 2 in the Structure of NP459575, A Predicted Glutathione Synthase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of NP459575, A Predicted Glutathione Synthase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg400

b:38.1
occ:1.00
OE2 A:GLU237 1.8 42.0 1.0
OE1 A:GLU17 2.0 55.3 1.0
ND1 A:HIS136 2.2 30.8 1.0
CD A:GLU17 2.8 42.0 1.0
OE2 A:GLU17 2.9 44.6 1.0
CD A:GLU237 3.0 31.7 1.0
CE1 A:HIS136 3.1 33.9 1.0
CG A:HIS136 3.2 30.9 1.0
O2 A:SO4500 3.4 88.7 1.0
CB A:HIS136 3.6 34.3 1.0
OE1 A:GLU237 3.6 37.3 1.0
O4 A:SO4500 3.7 85.6 1.0
S A:SO4500 4.2 86.5 1.0
CG A:GLU17 4.2 22.7 1.0
CG A:GLU237 4.2 31.8 1.0
NE2 A:HIS136 4.2 30.6 1.0
CD2 A:HIS136 4.3 27.3 1.0
NE2 A:HIS138 4.4 36.7 1.0
CB A:GLU17 4.6 33.1 1.0
NH1 A:ARG239 4.7 31.3 1.0
CD A:ARG239 4.8 27.9 1.0
NH2 A:ARG228 4.8 35.0 1.0
O3 A:SO4500 4.9 71.7 1.0

Magnesium binding site 2 out of 2 in 1tt4

Go back to Magnesium Binding Sites List in 1tt4
Magnesium binding site 2 out of 2 in the Structure of NP459575, A Predicted Glutathione Synthase From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of NP459575, A Predicted Glutathione Synthase From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:43.8
occ:1.00
OE2 B:GLU17 2.1 40.4 1.0
ND1 B:HIS136 2.2 41.2 1.0
OE1 B:GLU237 2.2 31.9 1.0
CE1 B:HIS136 3.0 30.8 1.0
O3 B:SO4501 3.1 64.7 1.0
CD B:GLU17 3.2 42.4 1.0
CG B:HIS136 3.3 32.8 1.0
CD B:GLU237 3.3 32.2 1.0
OE1 B:GLU17 3.6 37.7 1.0
CB B:HIS136 3.7 34.0 1.0
OE2 B:GLU237 3.9 33.8 1.0
NE2 B:HIS136 4.2 33.9 1.0
O1 B:SO4501 4.2 54.5 1.0
S B:SO4501 4.2 77.5 1.0
CD2 B:HIS136 4.3 28.6 1.0
CD B:ARG239 4.5 27.9 1.0
CG B:GLU17 4.5 31.0 1.0
CG B:GLU237 4.5 32.5 1.0
NH1 B:ARG239 4.6 32.4 1.0
NE2 B:HIS138 4.7 32.4 1.0
CB B:GLU17 4.7 33.1 1.0
NH2 B:ARG228 4.8 30.7 1.0
O2 B:SO4501 5.0 74.8 1.0

Reference:

D.J.Miller, L.Shuvalova, W.F.Anderson, Midwest Center For Structural Genomics (Mcsg). Structure of NP459575, A Predicted Glutathione Synthase From Salmonella Typhimurium To Be Published.
Page generated: Tue Aug 13 14:37:39 2024

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