Magnesium in PDB 1u02: Crystal Structure of Trehalose-6-Phosphate Phosphatase Related Protein

The structure of Crystal Structure of Trehalose-6-Phosphate Phosphatase Related Protein, PDB code: 1u02 was solved by N.R.Krishnamurthy, D.Kumaran, S.Swaminathan, S.K.Burley, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.92
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	117.995, 45.056, 53.391, 90.00, 90.65, 90.00
R / Rfree (%)	19.7 / 21.6

The structure of Crystal Structure of Trehalose-6-Phosphate Phosphatase Related Protein also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Trehalose-6-Phosphate Phosphatase Related Protein (pdb code 1u02). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Trehalose-6-Phosphate Phosphatase Related Protein, PDB code: 1u02:

Magnesium binding site 1 out of 1 in the Crystal Structure of Trehalose-6-Phosphate Phosphatase Related Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Trehalose-6-Phosphate Phosphatase Related Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg240 b:18.0 occ:1.00 OD1 A:ASP179 2.0 16.6 1.0 O A:HOH254 2.0 17.4 1.0 O A:ASP9 2.1 13.0 1.0 OD2 A:ASP7 2.1 17.0 1.0 O A:HOH255 2.1 20.7 1.0 O A:HOH253 2.1 15.2 1.0 CG A:ASP7 3.0 13.6 1.0 CG A:ASP179 3.0 18.0 1.0 OD1 A:ASP7 3.2 16.1 1.0 C A:ASP9 3.3 12.6 1.0 OD2 A:ASP179 3.4 18.5 1.0 OD2 A:ASP183 4.0 20.6 1.0 O A:HOH419 4.1 32.6 1.0 CA A:ASP9 4.1 12.2 1.0 OG1 A:THR11 4.1 15.1 1.0 OD2 A:ASP180 4.2 24.3 1.0 N A:GLY10 4.2 14.4 1.0 CB A:ASP9 4.3 12.9 1.0 N A:ASP9 4.3 11.1 1.0 CB A:ASP7 4.4 14.3 1.0 CB A:ASP179 4.4 17.2 1.0 CA A:GLY10 4.4 14.8 1.0 N A:ASP179 4.5 17.3 1.0 O A:HOH400 4.5 13.9 1.0 CG A:ASP180 4.6 22.3 1.0 O A:HOH263 4.7 15.7 1.0 C A:GLY10 4.7 15.5 1.0 N A:THR11 4.7 14.7 1.0 NZ A:LYS161 4.8 24.8 1.0 N A:ASP180 4.9 21.4 1.0 C A:TYR8 4.9 12.3 1.0 CA A:ASP179 4.9 18.6 1.0 OD1 A:ASP180 4.9 23.8 1.0 CG A:ASP183 5.0 21.7 1.0

K.N.Rao, D.Kumaran, J.Seetharaman, J.B.Bonanno, S.K.Burley, S.Swaminathan. Crystal Structure of Trehalose-6-Phosphate Phosphatase-Related Protein: Biochemical and Biological Implications. Protein Sci. V. 15 1735 2006.
ISSN: ISSN 0961-8368
PubMed: 16815921
DOI: 10.1110/PS.062096606