Atomistry » Magnesium » PDB 1tkk-1u3f » 1u3f
Atomistry »
  Magnesium »
    PDB 1tkk-1u3f »
      1u3f »

Magnesium in PDB 1u3f: Structural and Functional Characterization of A 5,10- Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087)

Enzymatic activity of Structural and Functional Characterization of A 5,10- Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087)

All present enzymatic activity of Structural and Functional Characterization of A 5,10- Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087):
6.3.3.2;

Protein crystallography data

The structure of Structural and Functional Characterization of A 5,10- Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087), PDB code: 1u3f was solved by S.Chen, A.F.Yakunin, M.Proudfoot, R.Kim, S.-H.Kim, Berkeleystructural Genomics Center (Bsgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.38 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.135, 74.369, 110.614, 90.00, 90.00, 90.00
R / Rfree (%) 22.3 / 26.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structural and Functional Characterization of A 5,10- Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087) (pdb code 1u3f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structural and Functional Characterization of A 5,10- Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087), PDB code: 1u3f:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 1u3f

Go back to Magnesium Binding Sites List in 1u3f
Magnesium binding site 1 out of 2 in the Structural and Functional Characterization of A 5,10- Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural and Functional Characterization of A 5,10- Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:48.3
occ:1.00
 OD2 A:ASP154 2.4 36.1 1.0
O1A A:ADP201 2.4 37.1 1.0
O A:HOH773 2.5 27.4 1.0
O A:HOH612 2.5 20.6 1.0
O3B A:ADP201 2.6 35.7 1.0
OD2 A:ASP124 2.6 32.2 1.0
CG A:ASP154 3.1 35.6 1.0
PB A:ADP201 3.5 37.6 1.0
OD1 A:ASP154 3.5 34.9 1.0
O2B A:ADP201 3.5 34.6 1.0
CG A:ASP124 3.6 30.3 1.0
PA A:ADP201 3.6 39.2 1.0
O A:ARG115 3.6 29.8 1.0
NZ A:LYS3 3.7 44.1 1.0
O3A A:ADP201 3.8 40.5 1.0
OD1 A:ASP124 3.8 30.9 1.0
CB A:ASP154 4.0 33.5 1.0
O2A A:ADP201 4.2 39.2 1.0
O A:HOH644 4.2 28.4 1.0
NE1 A:TRP153 4.4 40.6 1.0
O A:HOH608 4.4 22.5 1.0
CA A:ASP154 4.5 32.5 1.0
O A:HOH614 4.6 29.2 1.0
CD1 A:TRP153 4.6 36.1 1.0
CE A:LYS3 4.7 46.5 1.0
C A:ARG115 4.8 31.5 1.0
O1B A:ADP201 4.8 38.2 1.0
O5' A:ADP201 4.8 40.3 1.0
CB A:ASP124 4.9 30.6 1.0

Magnesium binding site 2 out of 2 in 1u3f

Go back to Magnesium Binding Sites List in 1u3f
Magnesium binding site 2 out of 2 in the Structural and Functional Characterization of A 5,10- Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structural and Functional Characterization of A 5,10- Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:33.5
occ:1.00
 OD2 B:ASP154 2.4 35.6 1.0
O B:HOH723 2.5 36.1 1.0
O1B B:ADP202 2.5 31.0 1.0
OD2 B:ASP124 2.5 24.5 1.0
O1A B:ADP202 2.5 31.3 1.0
CG B:ASP154 3.1 34.3 1.0
PB B:ADP202 3.3 30.2 1.0
O3B B:ADP202 3.4 30.1 1.0
CG B:ASP124 3.4 23.0 1.0
NZ B:LYS3 3.5 47.0 1.0
PA B:ADP202 3.5 32.1 1.0
OD1 B:ASP154 3.6 36.6 1.0
O3A B:ADP202 3.6 31.6 1.0
OD1 B:ASP124 3.7 21.7 1.0
O B:ARG115 3.8 33.5 1.0
O B:HOH806 4.0 52.3 1.0
CB B:ASP154 4.1 33.2 1.0
O2A B:ADP202 4.1 33.2 1.0
NE1 B:TRP153 4.3 39.2 1.0
O B:HOH604 4.4 24.0 1.0
CA B:ASP154 4.5 33.9 1.0
CE B:LYS3 4.5 49.7 1.0
CD1 B:TRP153 4.6 37.1 1.0
O B:HOH626 4.7 27.1 1.0
O2B B:ADP202 4.8 31.7 1.0
CB B:ASP124 4.8 21.1 1.0
O5' B:ADP202 4.9 31.2 1.0
C B:ARG115 4.9 33.0 1.0

Reference:

S.Chen, D.H.Shin, R.Pufan, R.Kim, S.-H.Kim. Crystal Structure of Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae (Gi: 13508087) at 2.2 A Resolution Proteins V. 56 839 2004.
ISSN: ISSN 0887-3585
PubMed: 15281135
DOI: 10.1002/PROT.20214
Page generated: Tue Aug 13 14:42:10 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy