Magnesium in PDB 1uad: Crystal Structure of the Rala-Gppnhp-SEC5 Ral-Binding Domain Complex

The structure of Crystal Structure of the Rala-Gppnhp-SEC5 Ral-Binding Domain Complex, PDB code: 1uad was solved by S.Fukai, H.T.Matern, R.H.Scheller, A.T.Brunger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.51 / 2.10
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	117.418, 117.418, 102.676, 90.00, 90.00, 90.00
R / Rfree (%)	21.9 / 25.4

The binding sites of Magnesium atom in the Crystal Structure of the Rala-Gppnhp-SEC5 Ral-Binding Domain Complex (pdb code 1uad). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Rala-Gppnhp-SEC5 Ral-Binding Domain Complex, PDB code: 1uad:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Rala-Gppnhp-SEC5 Ral-Binding Domain Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Rala-Gppnhp-SEC5 Ral-Binding Domain Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg300 b:38.7 occ:1.00 O2B A:GNP200 2.1 27.8 1.0 O A:HOH352 2.2 25.0 1.0 OG1 A:THR46 2.3 38.2 1.0 O2G A:GNP200 2.3 34.7 1.0 OG A:SER28 2.4 27.9 1.0 O A:HOH348 2.4 37.9 1.0 CB A:THR46 3.1 37.2 1.0 PB A:GNP200 3.2 31.6 1.0 PG A:GNP200 3.3 37.1 1.0 CB A:SER28 3.3 24.9 1.0 N3B A:GNP200 3.3 32.7 1.0 N A:SER28 3.9 26.6 1.0 N A:THR46 3.9 41.2 1.0 OD2 A:ASP68 3.9 32.7 1.0 CA A:THR46 4.1 39.1 1.0 O3G A:GNP200 4.1 32.1 1.0 OD1 A:ASP68 4.2 28.1 1.0 CA A:SER28 4.2 25.9 1.0 CG2 A:THR46 4.2 33.2 1.0 O1B A:GNP200 4.2 30.3 1.0 O A:THR69 4.3 29.2 1.0 O3A A:GNP200 4.4 32.1 1.0 O2A A:GNP200 4.4 29.9 1.0 O1G A:GNP200 4.4 36.1 1.0 O A:HOH324 4.4 38.7 1.0 CG A:ASP68 4.4 32.8 1.0 O A:GLU44 4.5 53.5 1.0 PA A:GNP200 4.7 32.1 1.0 O1A A:GNP200 4.7 30.8 1.0 CB A:LYS27 4.8 23.7 1.0 C A:PRO45 4.9 44.4 1.0 C A:LYS27 4.9 26.1 1.0 NZ A:LYS27 4.9 28.3 1.0 CE A:LYS27 4.9 26.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Rala-Gppnhp-SEC5 Ral-Binding Domain Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Rala-Gppnhp-SEC5 Ral-Binding Domain Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg300 b:53.7 occ:1.00 O2B B:GNP1200 2.2 45.2 1.0 O2G B:GNP1200 2.3 49.3 1.0 OG B:SER28 2.3 37.6 1.0 OG1 B:THR46 2.4 47.1 1.0 O B:HOH1255 2.4 50.6 1.0 O B:HOH1263 2.4 55.5 1.0 N3B B:GNP1200 3.1 48.9 1.0 PG B:GNP1200 3.2 51.4 1.0 CB B:SER28 3.2 39.3 1.0 PB B:GNP1200 3.2 46.3 1.0 CB B:THR46 3.2 49.0 1.0 N B:SER28 3.9 39.8 1.0 N B:THR46 3.9 54.6 1.0 OD2 B:ASP68 4.1 42.4 1.0 CA B:SER28 4.1 38.6 1.0 O1G B:GNP1200 4.1 52.8 1.0 O2A B:GNP1200 4.1 46.6 1.0 CA B:THR46 4.2 51.1 1.0 O3G B:GNP1200 4.2 50.5 1.0 O3A B:GNP1200 4.3 45.6 1.0 O1B B:GNP1200 4.3 45.5 1.0 O B:GLU44 4.4 64.4 1.0 CG2 B:THR46 4.4 46.3 1.0 OD1 B:ASP68 4.4 41.6 1.0 O B:HOH1238 4.5 38.4 1.0 O B:THR69 4.5 44.5 1.0 PA B:GNP1200 4.6 45.5 1.0 CG B:ASP68 4.6 40.0 1.0 O1A B:GNP1200 4.7 46.4 1.0 C B:PRO45 4.8 57.7 1.0 CB B:LYS27 4.8 40.0 1.0 CE B:LYS27 4.8 40.5 1.0 C B:LYS27 4.9 41.1 1.0 O B:HOH1260 5.0 38.1 1.0

S.Fukai, H.T.Matern, J.R.Jagath, R.H.Scheller, A.T.Brunger. Structural Basis of the Interaction Between Rala and SEC5, A Subunit of the SEC6/8 Complex Embo J. V. 22 3267 2003.
ISSN: ISSN 0261-4189
PubMed: 12839989
DOI: 10.1093/EMBOJ/CDG329