Atomistry » Magnesium » PDB 1u3g-1uet » 1ubo
Atomistry »
  Magnesium »
    PDB 1u3g-1uet »
      1ubo »

Magnesium in PDB 1ubo: Three-Dimensional Structure of the Carbon Monoxide Complex of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F

Enzymatic activity of Three-Dimensional Structure of the Carbon Monoxide Complex of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F

All present enzymatic activity of Three-Dimensional Structure of the Carbon Monoxide Complex of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F:
1.12.2.1;

Protein crystallography data

The structure of Three-Dimensional Structure of the Carbon Monoxide Complex of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F, PDB code: 1ubo was solved by H.Ogata, Y.Mizoguchi, N.Mizuno, K.Miki, S.Adachi, N.Yasuoka, T.Yagi, O.Yamauchi, S.Hirota, Y.Higuchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 98.000, 125.980, 66.570, 90.00, 90.00, 90.00
R / Rfree (%) 13.4 / 13.7

Other elements in 1ubo:

The structure of Three-Dimensional Structure of the Carbon Monoxide Complex of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Iron (Fe) 12 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Three-Dimensional Structure of the Carbon Monoxide Complex of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F (pdb code 1ubo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Three-Dimensional Structure of the Carbon Monoxide Complex of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F, PDB code: 1ubo:

Magnesium binding site 1 out of 1 in 1ubo

Go back to Magnesium Binding Sites List in 1ubo
Magnesium binding site 1 out of 1 in the Three-Dimensional Structure of the Carbon Monoxide Complex of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Three-Dimensional Structure of the Carbon Monoxide Complex of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg1005

b:8.0
occ:1.00
 O L:HOH3001 2.1 9.3 1.0
O L:HOH3002 2.1 8.8 1.0
O L:HOH3003 2.1 9.0 1.0
OE2 L:GLU62 2.1 9.2 1.0
NE2 L:HIS552 2.1 8.5 1.0
O L:LEU498 2.2 8.4 1.0
CE1 L:HIS552 3.1 9.6 1.0
CD L:GLU62 3.1 8.6 1.0
CD2 L:HIS552 3.2 8.8 1.0
C L:LEU498 3.3 8.1 1.0
OE1 L:GLU62 3.4 8.9 1.0
N L:LEU498 3.7 8.7 1.0
CA L:LEU498 3.9 7.8 1.0
OE1 L:GLN497 4.1 9.7 1.0
OE1 L:GLU337 4.1 10.2 1.0
OE2 L:GLU337 4.2 9.7 1.0
NZ L:LYS374 4.2 8.6 1.0
CB L:LEU498 4.2 9.8 1.0
ND1 L:HIS552 4.2 8.8 1.0
O L:HOH3050 4.3 8.9 1.0
O L:HOH3056 4.3 8.9 1.0
CG L:HIS552 4.3 8.4 1.0
N L:VAL499 4.4 7.8 1.0
CG L:GLU62 4.4 8.5 1.0
CD L:GLU337 4.5 9.9 1.0
CD L:LYS374 4.6 8.6 1.0
CA L:VAL499 4.7 7.7 1.0
CE L:LYS374 4.7 8.6 1.0
C L:GLN497 4.7 7.9 1.0

Reference:

H.Ogata, Y.Mizoguchi, N.Mizuno, K.Miki, S.Adachi, N.Yasuoka, T.Yagi, O.Yamauchi, S.Hirota, Y.Higuchi. Structural Studies of the Carbon Monoxide Complex of [Nife]Hydrogenase From Desulfovibrio Vulgaris Miyazaki F: Suggestion For the Initial Activation Site For Dihydrogen J.Am.Chem.Soc. V. 124 11628 2002.
ISSN: ISSN 0002-7863
PubMed: 12296727
DOI: 10.1021/JA012645K
Page generated: Tue Aug 13 14:48:55 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy